[[BlogList(recent=10, max_size=250, format=float, heading=News, category=MCF)]] = About MOLGENIS/compute = MOLGENIS/compute is a framework for bioinformatics which enables large scale data and computational workflow management in a distributed execution environment. = Getting Started = == Compute 5 (for research and development): == * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/molgenis-compute-core-1.0.0-20140402.104325-2-distribution.zip Download latest stable MOLGENIS/compute 5 distribution (command-line version)] * [http://www.molgenis.org/jenkins/job/molgenis-compute/ws/molgenis-compute-core/target/molgenis-compute-core-0.0.1-SNAPSHOT-distribution.zip Download latest beta build of MOLGENIS/compute from Jenkins] * [https://github.com/molgenis/molgenis-compute MOLGENIS/compute source code @ GitHub repository] * [https://rawgithub.com/molgenis/molgenis-compute/master/molgenis-compute-core/README.html MOLGENIS/compute user guide @ GitHub repository] == == Compute 5 VM for NGS analysis == * [http://www.molgenis.org/wiki/ComputeVM Compute 5 resources to run NGS analysis in the Open Stack cloud] == Presentations: == * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/MolgenisCompute_2014_05-15_FvD.pdf Presentation at BBMRI-BioBank Cloud meeting (May 2014, Stockholm, Sweden)] by Freerk van Dijk * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/MolgenisCompute_2014-04-15_FvD.pdf Presentation at DTL focus NGS pipeline meeting (April 2014, Utrecht)] by Freerk van Dijk * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/IWSG-2013-presentation.pdf Presentation at IWSG-2013 (June 2013, Zurich, Switzerland)] by [http://www.molgenis.org/wiki/Byelas George Byelas] * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/DijkstraTargetConference2013.pdf Presentation at the Target conference (April 2013, Groningen)] by Martijn Dijkstra * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/Swertz_eBioGrid_final_presentation.pdf Presentation at eBioGrid (December 2012, Amsterdam)] by Morris Swertz * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/October_2012.pdf Presentation at NBIC BioAssist (October 2012, Utrecht)] by [http://www.molgenis.org/wiki/Byelas George Byelas] & Freerk van Djik == Publications: == * [http://www.molgenis.org/raw-attachment/wiki/ComputeStart/IWSG-2013.pdf Scaling bio-analyses from computational clusters to grids (2013)] * [http://www.molgenis.org/raw-attachment/blog/2012/11/22/bioinformatics2012.pdf Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework (2012)] * [http://www.molgenis.org/raw-attachment/blog/mcf-cyprus/pdp-2011.pdf Towards a MOLGENIS based computational framework (2011)] == Old compute 4 (recommended for production work): == * [https://github.com/molgenis/molgenis_apps-legacy/blob/testing/doc/compute/01_compute_introduction.md MOLGENIS/compute v4 User Guide] * [https://github.com/molgenis/molgenis_apps-legacy/blob/testing/doc/compute/02_compute_imputation.md Imputation pipeline] * [https://github.com/molgenis/molgenis_apps-legacy/blob/testing/doc/compute/03_compute_ngs.md Next-generation sequencing pipeline] * [https://github.com/molgenis/molgenis_apps-legacy/blob/testing/doc/compute/04_installation_of_tools.md Installation of tools] * [http://molgenis26.target.rug.nl/downloads/molgenis_compute-4-latest.zip Compiled MOLGENIS/compute v4 distribution of 2013-03-08] = Where is MOLGENIS/compute used? = [[Image(logos1.jpg)]] = Who develops MOLGENIS/compute? = MOLGENIS/compute is created by the [http://www.molgenis.org/wiki/GccStart Genomics Coordination Center team] in the University Medical Centre Groningen, the Netherlands.