== Run D2R server  ==
 * You will need :
   * jar files.
   * ...src\d2rq\generate_mapping.java as well as dump rdf class.
 * "How to sparql molgenis "
   * '''D2R SERVER START working:'''
     * $ ./d2r-server.bat -p 2020 molgenis.n3
     * @ http://localhost:2020/snorql/ TADA!

== Log  ==
 * molgenis_rdf_test from SVN. Problem running.
   * Updated molgenis version .
     * Just that Server Tomcat failed to Start
 * Disease book from Mark , including :
   * Disease_book project
   * Molgenis3_3
   * ontologiedatabasetest *
 * 
 * http://hackathon3.dbcls.jp/ - http://www.ustream.tv/channel/biohackathon2010 (!)
 * '''Translate natural language to sparql ''':
   * "....Is there any way of translating a natural language query to a SPARQL one? or should we need to develop?[[BR]] Some "buffer" layer, which bridges the gap between highly structured language such as SPARQL and unstructured one (i.e., natural language), might be needed. [http://swoogle.umbc.edu/ Swoogle] may be useful. Also, information extraction (IE) technology is crucial to identify a key concept in literature. Natural language processing (NLP) technology used for IE in life science such as [http://www-tsujii.is.s.u-tokyo.ac.jp/medie/ MEDIE] or [http://www-tsujii.is.s.u-tokyo.ac.jp/enju/ Enju] can be used......"
 * next steps : how to map inheritance in the object model to the mapping file - if we can also add our descriptions from xml to the mapping[[BR]] (if it makes sense to embelish the model with more information).  We need to generate this file automatically when the MOLGENIS generator runs.
   * The first step generate-mapping file from your source (here mysql database) and this is :
     * (outside molgenis)
       * Build d2r server (there should be a java class to create an instance)
       * (the above may need the appropriate jar includes)
       * log config
       * Class :  d2rq.generate_mapping
         * [exec java -cp "$CP" -Xmx256M "-Dlog4j.configuration=${LOGCONFIG}" d2rq.generate_[[BR]]mapping "$@"]
         * D2RQ classes @ d2r-server-0.7/src/de/fuberlin/wiwiss/d2rs
     * ..So now we actually need the class to generate mapping  and start Server
       * there is something missing .re-download d2rq server ..and TAD there it is in : .......src\d2rq\generate_mapping.java
       * So call this class!

 * Links :

 * semantic Web search : http://swoogle.umbc.edu/
 * [http://hackathon3.dbcls.jp/wiki/Tools SparqlTutorial : http://hackathon3.dbcls.jp/wiki/SparqlTutorial]
 * RDF editor : http://www.cs.rpi.edu/~puninj/rdfeditor/ *