== Installation Notes ==
 * Make disease book run (create database and then run) :
   * As root  user in mysql :
     * mysql> create database syndromebooktest_db; grant all privileges on syndromebook
     * test_db.* to molgenis@localhost identified by 'molgenis'; flush privileges; -- Query OK, 1 row affected (0.00 sec)
       * After this syndromebooktest_db is visible as molgenis user.
   * To run need molgenis3_3:
     * Disease book succesfully run . !
 * DiseaseBook model : available in html & dot , but no images available --> download graphiz :
   * how to create the images for the data model with [http://www.graphviz.org/About.php Graphviz:]
     * according to this : http://www.molgenis.org/wiki/TracWorkflow  , http://www.molgenis.org/wiki/MolgenisOnWindows
       * we just need the dot files .
       * install graphviz & fix PATH:  set to run 'dot.exe' from the commandline. In windows this is set in the control panel → System → Environment variables.:
         * Open graphviz : open dot files --> run ! --> Save As .. *
 * new workspace: with mark' model :
   * changes in model:
     * login --> user  .. later we can add authentication of molgenis (need  the  specific database table..)
     * syndrome --> patient
     * Gene --> Gene
     * OntologySource --> OntologySource
     * OntologyTerm --> OntologyTerm *
 * Actions :
   * chat with Arthur Kuipers
     * are there any example data . We have available a potential format : http://localhost:8080/hvp_pilot/generated-doc/fileformat.html
     * Mark Kiestra : is here a mysql dump for disease book .
       * are there samples of real  data --> mail to Mark ..done !
     * if Mark hasn't any available data  refer to Rolf.  *
 * MacBook :
   * Install tomcat http://www.malisphoto.com/tips/tomcatonosx.html
   * Setting environment variables : http://mactip.blogspot.com/2004/04/setting-environment-variables.html
   * Use Macports to install mysql : http://www.malisphoto.com/tips/mysql-on-os-x.html *