* problem in molgenis rdf_test :
   * delete digital_identity entries in moglenis.n3
   * run again :
     * new errors:
       * *         The import org.erasmusmc cannot be resolved
       * remove all references in Peregrine in /molgenis_rdf_test/handwritten/java/plugin/MainPage/MainPage.java
         * '''peregrine should run separately ! Needs a lot of memory ! '''
         * run again , ok!
   * Now we got there : http://localhost:2020/ is actually showing molgenis data !
   * Now we need some real data : Form Joery : xgap_1_2_distro_15jan2010.sql
     1. Mysqlimport data into xgap_15_January:
       1. * mysql> create  database xgap_15_January
       * grant all privileges on xgap_15_January.* to molgenis@localhost identified by 'molgenis'; flush privileges; *
       * * $  mysql5 -u root -p   xgap_15_January < /Users/despoina/Documents/xgap_1_2_distro_15jan2010.sql
       * 
     1. Change database setting in molgenis.properties
     1. Run generate model
       1. copy model to file xgap_15_January_db.xml
       1. add :
         1. <?xml version="1.0" encoding="UTF-8"?>
         1. <molgenis name="xgap_15_January">
       * Field name was missing in some table in DB so error :

 1. /molgenis/src/org/molgenis/model/jaxb/Model.java : add a check at if :
   1. * if (entity.getName().toLowerCase().equals(name.toLowerCase()))

 * After the model is created we detect the missing field name :

 1. mref field descriptionId
 1. Material : added name="Material_id"
 1. OntologyTerm : added name="OntologyTerm"
 1. Strain: name="StrainId"

 * this could produce a lot of crap errors...import models form Joery (
   * fuge_db.xml, xgap_db_nochromosome.xml
   * these models work.
   * 
 * ''' In order to see your data in http://localhost:2020/ first build the mapping .: '''
   * $ generate-mapping -d com.mysql.jdbc.Driver -u root -p ... !jdbc:mysql://127.0.0.1/xgap_15_January > xgap_15_January.n3
   * In file :    * /Users/despoina/Documents/workspace/molgenis_rdf_test/!WebContent/WEB-INF/molgenis.n3
 * TODO : the data showed in d2r browser are stack on address book . Where are they hiddenly cached?

 * Misc : There are three different kinds of Web agents that can access  data through simple  HTTP-based interfaces:
   * RDF browsers, traditional HTML browsers, and  SPARQL query clients.
   * http://www4.wiwiss.fu-berlin.de/bizer/d2r-server/publishing/ *
 * http://www.mecheng.adelaide.edu.au/~will/texstart/ : Download this as a start : http://www.mecheng.adelaide.edu.au/~will/texstart/
 * http://ii2.sourceforge.net/tex-index.html