Debug lucene search

 * '''''Check if " The desired term is in a field that was not defined as 'indexed'. Re-index the document and make the field indexed."'''''
   * we cannot be sure of every term, but at least some of them were found in the previous version so the problem is not this .
   * according to this : http://lucene.apache.org/java/2_0_0/fileformats.html
     * change in buildIndex() Field.Store.YES, Field.Index.NO,  re index , search still does not work.
     * although this could not change thinks. In previous version "gene description is Field.Index.NOT_ANALYZED, and still all the individual terms that are contained are found.
   * an example is ATP, which is not defined as indexed individually.
 * '''''The term is in a field that was not tokenized during indexing and therefore, the entire content of the field was considered as a single term. Re-index the documents and make sure the field is tokenized.'''''
   * No term is tokenized individually.
   * according to this : http://lucene.apache.org/java/2_2_0/api/org/apache/lucene/document/Field.html
   * we are using this '''[http://gbic.target.rug.nl/org/apache/lucene/document/Field.html#Field(java.lang.String, java.lang.String, org.apache.lucene.document.Field.Store, org.apache.lucene.document.Field.Index) Field]'''([http://java.sun.com/j2se/1.4/docs/api/java/lang/String.html String] name, [http://java.sun.com/j2se/1.4/docs/api/java/lang/String.html String] value, [http://gbic.target.rug.nl/org/apache/lucene/document/Field.Store.html Field.Store] store, [http://gbic.target.rug.nl/org/apache/lucene/document/Field.Index.html Field.Index] index) [[BR]]          Create a field by specifying its name, value and how it will be saved in the index.
   * So no tokenization is defined ,
 * 
   * 
   * Presentation ! Title? : Indexing based retrieval from molgenis & Ontocat

Links

http://forrest.apache.org/

rdf formats : https://wiki.nbic.nl/index.php/DbNPInspiration#RDF_formats

http://demo.sysmo-db.org/forums

ISA-TAB :

http://isatab.sourceforge.net/

http://www.ncbi.nlm.nih.gov/pubmed/18447634

ISA https://docs.google.com/viewer?url=http://isatab.sourceforge.net/docs/ISAInfrastructure-Fact-Sheet.pdf

MI..s - .. http://en.wikipedia.org/wiki/Minimum_Information_Standards

BioInvestigation Index : http://www.ebi.ac.uk/bioinvindex/browse_studies.seam

http://www.ebi.ac.uk/bioinvindex/home.seam