* gcc meeting & Molgenis scrum
 * meeting with Morris about molgenis semantics

= Molgenis semantics =
 1. Create a new <field type = "ontology Term" . This will enable browsing like showing a dropdown menu or a wizard that could retreive term (connect to Ontocat)

 * Specification (manual) 
 * code plan 
 * Testing



 2. We need multiple molgenis systems using RDF , and connection between them.

 * How the data should look like ? (already n3 is available in molgenis by D2R ) 
 * We would like to define relationships  
   *  So we need an ontology file that described the data  o        Add an attribute in the molgenis xml file : rdf => rdf relatioship label.... 
   * If ontology references are available  --> reach RDF sources     o        (new data type in data model) 

 e.g Let’s assume  "sample" in xgap two different entities but contains different synonyms for the same word.We would like to have a linkage between them like an owl file .  Fow example the id field in http://bioportal.bioontology.org/visualize/42838/?conceptid=Spectrometer&jump_to_nav=true  is  http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Spectrometer

 * XML  -→ OWL convert  XML ←? OWL



 3. RDF annotation
 3. <field rdf type=”Thesaurus.owl#Spectrometer”
 3. Generate into n3

 4. Pilot of RDF into 2 pheno systems

Could we query the two half phenos ?

 5. Can we use RDF to integrate different molgenis? (pheno & xgap )

In semantic search (lucene indexing )

Install in xgap & phenotype •        Configure •        Adjust •        Test  •        Finish

 * skype about biobanking hackathon demo .