= Biobanks missing from server =
Create from scratch (molgenis distro ) the Biobanks (BBMRI), Fill database

this will be faster and more complete : adjust pheno--> http://gbic.target.rug.nl:8080/Biobanks/molgenis.do

= GCC project =
 * Add gcc integrated bbmri project in gbic server.: http://gbic.target.rug.nl:8080/bbmri_gcc/molgenis.do
 * Database contents cannot be shown .!; 
   * 21400 ERROR [JDBCDatabase] executeQuery(select count(*) as num_rows  FROM Biobank  INNER JOIN Panel ON (Biobank.id = Panel.id) INNER JOIN !ObservationTarget ON (Biobank.id = !ObservationTarget.id) INNER JOIN !ObservationElement ON (Biobank.id = !ObservationElement.id) LEFT JOIN Investigation AS xref_Investigation  ON xref_Investigation.id = !ObservationElement.Investigation LEFT JOIN !OntologyTerm AS xref_ontologyReference  ON xref_ontologyReference.id = !ObservationElement.ontologyReference LEFT JOIN !OntologyTerm AS xref_Species  ON xref_Species.id = Panel.Species LEFT JOIN !OntologyTerm AS xref_PanelType  ON xref_PanelType.id = Panel.!PanelType LEFT JOIN !OntologyTerm AS xref_Category  ON xref_Category.id = Biobank.Category WHERE !ObservationElement.!__Type = 'Biobank')com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'bbmri.observationelement' doesn't exist



= D2R on gcc model: : Materials conflict =
{{{
$$$ mv molgenis-rdf-mapping.n3 molgenis-rdf-mapping_gcc.n3

$$$ d2r-server molgenis-rdf-mapping_gcc.n3

}}}
 * Fix missing classes: (despoina)
   * * de.fuberlin.wiwiss.d2rq.D2RQException: Object for !d2rq:refersToClassMap not found at !d2rq:PropertyBridge map:'''Biobank_materials''' (E21) *
   * Biobank material table exists in DB :
   * * mysql> describe Biobank_materials;
   * +-----------+---------+------+-----+---------+----------------+
   * | Field     | Type    | Null | Key | Default | Extra          |
   * +-----------+---------+------+-----+---------+----------------+
   * | autoid    | int(11) | NO   | PRI | NULL    | auto_increment |
   * | Materials | int(11) | NO   | MUL | NULL    |                |
   * | Biobank   | int(11) | NO   | MUL | NULL    |                |
   * +-----------+---------+------+-----+---------+------------ *
 * In magetab_sdrf.xml :

{{{
 <entity name="Material" extends="!ObservationTarget">
  <field name="SourceMaterials" xref_name="SourceTarget" type="mref" xref_entity="Material"  description="The source materials that this material was derived from. These are the edges in the experimental design graph." />
  <field name="protocolApplications" type="mref" xref_entity="ProtocolApplication" description="The protocols used to produce this material" />	
}}}
 * The only reference in Material in the rdf mapping file is
   * * 1388 !map:Biobank_materials a !d2rq:PropertyBridge;
   * 1389     !d2rq:belongsToClassMap !map:Biobank;
   * 1390     !d2rq:property !vocab:Biobank_Materials;
   * 1391     !d2rq:propertyDefinitionLabel "Materials";
   * 1392     !d2rq:propertyDefinitionComment "Materials";
   * 1393     !d2rq:refersToClassMap !map:OntologyTerm;
   * 1394     !d2rq:join "Biobank.id <= Biobank_Materials.Biobank";
   * 1395     !d2rq:join "Biobank_Materials.Materials => !OntologyTerm.id";
   * 1396     .
 * Add material in mappings file .
 * *