= BBMRI  =
=  =
==  Theme 1: fill the database ==
=== First goal: get !LifeLines features included in BBMRI biobank. ===
 * get BBMRI catalog running

 * import the Excel

 * biobank is a kind of panel

 * Lifelines is one of the biobanks

 * Get from Joris is a Excel export

=== Next goal: import more biobank information which we get from our BBMRI-EU colleagues ===
== Theme 2: start with 'semantic molgenis' ==
=== First goal: link MOLGENIS to external ontology ===
 * first enhance N3 file with external mapping

 * then test if we use that ontology in SPARQL query

 * if works: then update the MOLGENIS model + generator

=== Next step: investigate ontologies that should be linked ===
 * how about biobankers list of Marco Roos?

 * disease ontology?

 * material ontology?

=== Actions ===
 * Connect to Pedro to investigate his 'semantic molgenis' work?

 * Connect to BBMRI-EU to request more data?

= Log of Despoina =
[[TOC(DespoinaLog/2010*, inline, sectionindex,noheading)]]
= Topics =
 * [http://lucene.apache.org/java/3_0_1/gettingstarted.html Lucene]
 * [wiki:DespoinaLog_peregrine peregrine]
 * Text mining tools
   * [http://www.ondex.org/]
   * [http://jtmt.sourceforge.net/]
   * Online
     * http://www.ebi.ac.uk/webservices/whatizit/info.jsf
     * http://terminizer.org/
 * RESTful services .
   * [wiki:RESTful_architecture RESTful architecture]

 * SPARQL :
   * D2R server
     * D2RQ is a declarative language to describe mappings between relational database schemata and OWL/RDFS ontologies. The D2RQ Platform uses these mapping to enables applications to access a RDF-view on a non-RDF database.
     * [http://gbic.target.rug.nl/trac/pheno/wiki/DespoinaLog/2010/03/25 How to run .]
   * Resources : http://esw.w3.org/HCLSIG_BioRDF_Subgroup
   * Live Virtuoso Instance: http://lod.openlinksw.com/fct/facet.vsp