[[TOC()]] = Clusters and accounts = === Get account and sharing data === * [wiki:RequestAccount] - How to request an account for access to GCC maintained infrastructure (Cloud & HPC clusters) * [wiki:DataSharing] - How to up-/download data via SFTP * [wiki:TransparentMultiHopSSH] - How to connect via the proxy * [wiki:PortForwarding] - How to use port forwarding on Mac to use Filezilla and Komodo Edit === High Performance Computing (HPC) infra === ==== For Users ==== How to compute on the HPC generation 2.x clusters ''Calculon'', ''Zinc-Finger'' and ''Leucine-Zipper'' Clusters. * [wiki:HPC_versions Overview] - Description of the different HPC environments * [wiki:HPC_login Login] - How to start a session. * [wiki:HPC_analysis Analyses SOP] - How to manage your jobs on the cluster. * [wiki:HPC_resources Available resources] - What is available and where. * [wiki:HPC_storage Storage SOP] - What is stored where. * [wiki:HPC_support Support] - FAQs, mailinglists, courses and contact info to get in touch with an admin. * [wiki:HPC_maintenance Scheduled Maintenance] - Policy and dates for scheduled maintenance. How to compute on the HPC generation 3.x clusters * [wiki:HPC_analysisPublicBeta New documentation for gen. 3 clusters] - New Gearshift cluster online! ==== For Admins ==== * [wiki:HPC_admin_accounts SOP Accounts] - Managing users and groups for the HPC infrastructure. * [wiki:HPC_deploy Deploy Apps & Data] - SOP for central deployment of software and reference data sets. * [wiki:HPC_admin_storage Shared Storage Config] - How are logical file systems related to physical ones. * [wiki:HPC_admin_compute Compute Config] - SLURM schedulers, partitions and nodes. = Molgenis and VMs = === Cloud VMs / Jenkins / !WordPress === * [serverlist.gcc.rug.nl] - List of all VMs in our cloud. * [https://github.com/molgenis/molgenis-ops-ansible Create a new MOLGENIS instance] - You can create a new MOLGENIS VM based on CentOS running this Ansible script * [wiki:GccSopInstallationDeployServerInJenkins Install SOP / Deploy MOLGENIS via Jenkins] - How to deploy MOLGENIS on a VM using Jenkins. * [wiki:GccSopWordPress SOP WordPress] - How to manage !WordPress websites === Deploy MOLGENIS v2.x server based on PostGreSQL Golden VM === * [wiki:PostGreSQLBasedServerDeploy Deploy a PostGreSQL based MOLGENIS server] - How to deploy a MOLGENIS server compatible with MOLGENIS v2.0 and higher = Internal GCC SOPs = * [wiki:GCCSopUMCGNetwork SOP UMCG network] - How to connect to UMCG network * [wiki:GCCSopNewEmployee SOP new Employee (employee)] - Manual for employee * [wiki:GCCSopNewEmployeeGCC SOP New Employee (team)] - Manual for team * GccSopMolgenisRelease - How to create a MOLGENIS release * GccSopMolgenisBugfixRelease - How to create a MOLGENIS Bugfix-release * GccSopSystemsGeneticsRelease - How to create a Systems Genetics release * GccSopMolgenisComputeRelease - How to create a MOLGENIS Compute release