[[BlogList(recent=5, max_size=250, format=float, heading=News)]]

= Welcome to the Genomics Coordination Centre =
The center for genomics databases and analysis tools, courses and workshops. 

Contact head Morris Swertz (m.a.swertz@rug.nl) for more information or check [[Internships]] or AboutGcc

Our team members: TeamMembers

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= Study Capturing and Sharing Applications =
* [http://www.molgenis.org MOLGENIS] - biosoftware toolkit
* [http://www.xgap.org XGAP] - GWAS and GWL
* [http://www.animaldb.org AnimalDB] - animal observation
* [http://gbic.target.rug.nl/trac/lsdb MutationDB] - mutations and patients
* [http://www.phenoflow.org Pheno] - phenotype observations
* [http://gbic.target.rug.nl/trac/mage MAGE] - microarray database
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= Analysis Applications =
 * [http://www.bbmriwiki.nl Sequencing] - Pipelines for NGS data analysis and annotation
 * [http://www.bbmriwiki.nl Imputation] - Pipelines for imputation
 * [RqtlPackage R/QTL] - R package QTL analysis
 * [http://www.ontocat.org OntoCAT] - ontology toolkit
 * [DesignGg Design GG] - experimental design of QTL experiments
 * [GenomicIslandsAnalysis Genomic Islands] - genomic islands
 * [wiki:PeakML] format - file format for mass spectrometry data
 * MzMatch - pipeline for mass spectrometry experiments in the area of metabolomics
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= Shared Modules =
* [wiki:Modules]

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= Intranet =
 * GccGettingStarted - overview for new GCC participants
 * GccMeetings - Notes on our work meetings
 * MolgenisScrum - Our SCRUM project management pages
 * GccManuals - How to use the software and servers that we have
 * GccLinks - Hyperlinks to papers and websites of interest
 * GccTeam - Members of the group
 * GccCalendar - Meetings etc
 * GccGroup - Our mailing list and group discussion site
 * GccServers - How to connect to our servers
 * GccIfolder - How to connect to our iFolder
 * GccLogs - Logbooks of GCC people
 * GccAttachments - Attach here your private stuff
 * DataSharing/DataStorage on vm7 server
 * GccTargetStorage - directory structure on Target

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= Collaborations & Projects=
* [http://gbic.biol.rug.nl GBIC] - Groningen Bioinformatics Center, our method partner
* [http://www.geneticsgroningen.nl Genetics] - UMCG genetics department hosts the GccTeam
* [http://www.rug.nl/cit/index CIT] - Groningen Center for Information Technology hosts our data and computations
* [http://www.bbmriwiki.org BBMRI.NL] - Project lead of BBMRI-NL Bioinformatics
* [http://wiki.nbic.nl NBIC] - Lead Biobanking task force Netherlands BioInformatics Center
* [http://www.lifelines.nl LifeLines] - Developing IT infrastructure for 30yr/165.000 people cohort study
* [http://www.ebi.ac.uk EBI] - Visitor European Bioinformatics Institute
* [http://www.gen2phen.org EU-GEN2PHEN] - Associated partner Genotype to Phenotype project
* [http://www.casimir.ac.uk CASIMIR] - Invited partner Coordination and Sustainability of International Mouse Informatics Resources
* [http://www.helmholtz-hzi.de/en/research/host_resistance_and_susceptibility/infection_genetics/externally_funded_projects/sysgenet/ SYSGENET] -  European systems genetics network
* [http://http://www.panaceaproject.eu/ PANACEA] - Pathway analysis in C. elegans
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