= Documentation for the UMCG/LifeLines High Performance Computing (HPC) environments =

These pages describe the ''UMCG/LifeLines HPC version 2.x environment'' maintained by the [http://www.molgenis.org/wiki/GccStart GCC] and [http://www.rug.nl/science-and-society/centre-for-information-technology/?lang=en RUG CIT].
A summary of the differences between this one and other HPC environments is available in the [http://www.molgenis.org/wiki/HPC_versions Overview of High Performance Computing (HPC) environments @ UMCG/RUG]

[[TOC()]]

== For Users ==
 * [wiki:HPC_versions Overview] - Description of the different HPC environments
 * [wiki:RequestAccount Getting access] - How to request an account.
 * [wiki:HPC_resources Available resources] - What is available and where.
 * [wiki:HPC_login Login] - How to start a session.
 * [wiki:HPC_storage Storage SOP] - What is stored where.
 * [wiki:HPC_analysis Analyses SOP] - How to manage your jobs on the cluster.
 * [wiki:HPC_support Support] - FAQs, mailinglists, courses and contact info to get in touch with an admin.
 * [wiki:HPC_maintenance Scheduled Maintenance] - Policy and dates for scheduled maintenance.

== For public beta Testers ==
 * There is currently no test cluster: all clusters run in production mode.
{{{#!comment
 * [wiki:HPC_analysisPublicBeta Analyses SOP for test setup] - How to manage your jobs on the test cluster: 2017-01-01 new Boxy cluster online!
}}}

== For Admins ==
 * [wiki:HPC_admin_accounts SOP Accounts] - Managing users and groups for the HPC infrastructure.
 * [wiki:HPC_deploy Deploy Apps & Data] - SOP for central deployment of software and reference data sets.
 * [wiki:HPC_admin_storage Shared Storage Config] - How are logical file systems related to physical ones.
 * [wiki:HPC_admin_compute Compute Config] - SLURM schedulers, partitions and nodes.