= Documentation for the UMCG/LifeLines High Performance Computing (HPC) environments =

There are two flavors of HPC environments:
 * Version 1.x (old), which is deprecated and will be completely phased out before the end of 2015
 * Version 2.x (new) 

These pages describe the ''UMCG/LifeLines HPC version 2.x environment'' maintained by the [http://www.molgenis.org/wiki/GccStart GCC] and [http://www.rug.nl/science-and-society/centre-for-information-technology/?lang=en RUG CIT]. (The previous 1.x setup is documented here [wiki:HPC_v1 GCC HPC cluster + SFTP server])

A summary of the differences between the 1.x and 2.x environments is available in the [http://www.molgenis.org/wiki/HPC_versions Overview of High Performance Computing (HPC) environments @ UMCG/RUG]

[[TOC()]]

== For Users ==
 * [wiki:RequestAccount Getting access] - How to request an account
 * [wiki:HPC_resources Available resources] - What is available and where
 * [wiki:HPC_login Login] - How to start a session
 * [wiki:HPC_storage Storage SOP] - What is stored where
 * [wiki:HPC_analysis Analyses SOP] - How to manage your jobs on the cluster 
 * [wiki:HPC_support Support] - FAQs, mailinglists, courses and contact info to get in touch with an admin


== For Admins ==
 * SOP New User - Creating a new user account for the HPC infrastructure
 * [wiki:HPC_deploy Deploy Tools] - SOP Deploy Software and Reference Data.
 * [wiki:HPC_admin_storage Shared Storage Config] - How are logical file systems related to physical ones.
 * [wiki:HPC_admin_compute Compute Config] - SLURM schedulers, partitions and nodes.