Status: this is under development.

MOLGENIS is organized as a set of modules which we call plugins. Each plugin adds a combination of MolgenisModels, MolgenisDomainSpecificLanguage, MolgenisGenerators and/or handwritten code. Other plugins may extend other plugins to yet add more functionality. The first plugin where all others build upon is the MOLGENIS database core. 

= Technical Plugins =
 * wiki:Plugins/MolgenisCore - core platform of model parsers, generators, framework and utils
 * wiki:Plugins/MolgenisDatabase - database interface framework on top of MySQL, PostgreSQL and HypersonicSQL
 * wiki:Plugins/MolgenisUi - user interface framework that can be run on the internet

Planned:
 * wiki:Plugins/MolgenisAuth - authentication and secure sharing framework
 * wiki:Plugins/MolgenisProcessing - for easy modeling and running of analysis tools

= Functional Plugins = 
 * wiki:Plugins
 * wiki:Plugins/DataMatrix - 
 * wiki:Plugins/MolgenisPheno -
 * wiki:Plugins/Mutations - for representing and working with mutations
 * [Modules/XGAP Molecular Phenotypes]
 * [Modules/OntoCAT Ontologies]

= Systems =
Systems are ready to use and download:
 * [Systems/XGAP GWAS studies]
 * [Systems/XGAP QTL studies]
 * [Modules/S Sequence LIMS]
 * [Modules/XGAP Animal Observatory]
 *