= Stories for the research portal release of 31 dec 2011 =
These are user stories from LifeLines and PanaceaProject.

 * '''AppCatalogue''' - select and browse data
   * StoryCreateBiobankCatalog - load protocols, measurements, categories
   * StoryBrowseCatalogAndSelectFeatures - User can browse and select features in a treeview; Selected features are put in shopping cart. 
   * StoryRequestData - User can request access to data set; Includes summary of research, power calculation, etc.
   * StoryApproveRequest - LifeLines approves request; selected features and targets is passed to scenario 2.

 * '''AppInstaller''' - SOP to install research portal
   * StoryConvertPhenoData - prepare the pheno data in pheno format
   * StoryImputeGenoData - impute the raw genotype data (future)
   * StoryConvertGenoData - prepare geno data set(s) in binary and plink format
   * StoryNewMolgenisVm - create VM with the app and autoload data, users, firewall.
   * (LifeLInes) StoryLinkWomToVm - coordinate with UMCG-ICT to link VM to WOM

 * '''AppResearchPortal''' - user can access data via research portal
   * StoryBrowseAndSelectFeatures - User can browse and select features in a treeview; Selected features are put in shopping cart. 
   * StoryViewAndFilterInMatrix - user can browse and filter data in matrix view; repeated values can be made cols/rows
   * StoryDownloadAsPlink - user can select one feature and download with associated genotypes
   * StoryDownloadAsSpss - user can select multiple features and download as spss
   * StoryRunGwasAnalysis - user can select one feature and then choose to run GWAS automatically (future) 
== As LL team we want to provide a Molgenis Research Portal for each study ==
Scrum: ticket:949

Acceptance criteria:
* When a VM is rolled out, a Molgenis-based LL Research Portal is provided within it
* Based on the study request, this Portal will be filled with content (How do we know which content to load? Where does this happen?)
* Targets, protocols and measurements are retrieved from some location and put into the Portal. They are restricted based on the study request.
* The Portal instance contains only the pheno data that was requested for the study

Status: