= MOLGENIS suite overview: modules and products =
Here you can find summaries and links on the components listed in the ticket system. In the software, these components become packages. For example: org.molgenis.db for shared pacakes or org.col7a1 for application specific packages. We distinguish two groups of components as listed below. Also the use of '''keywords''' is explained which we use to clarify relationships from shared packages to application. For example: tickets in the 'auth' component can be marked with keywords 'animaldb' to enable tracking by the animaldb team.

|| ||end product: || '''[wiki:PhenoFlow biobankcatalog]''' || '''[wiki:AnimaldbStart animaldb]''' || '''ngs''' || '''[wiki:MutationStart mutationdb]''' || '''[wiki:XgapStart xqtl]''' || [wiki:ImputeStart impute] || '''[wiki:ImputationStart gwas]''' || '''mass_spec''' || '''[wiki:MageStart microarray]''' ||
|| || lead: || joris, despoina || erik || freerk, jessica, wil || robert || joeri, danny || george, alex, andre || alex, roan || george || alex jessica ||
|| [[BR]][[BR]][[BR]]module: || users:[[BR]][[BR]][[BR]] || lifelines [[BR]]bbmri [[BR]]bioshare[[BR]]nbic || fwn[[BR]][[BR]][[BR]] || bbrmi [[BR]]medgen[[BR]]nbic[[BR]] || nbic [[BR]]col7a1 [[BR]]chd7[[BR]] || panacea [[BR]]euratrans[[BR]]bioshare[[BR]]sysgenet || medgen[[BR]]lifelines[[BR]]bbmri[[BR]] || lifelines[[BR]]bioshare[[BR]]medgen[[BR]] || nbic[[BR]]npc[[BR]]fwn[[BR]] || bbmri[[BR]][[BR]][[BR]] ||
|| '''[MolgenisStart molgenis]''' || all || y || y || y || y || y || y || y || y || y ||
|| '''[wiki:DataModel datamodel]''' || morris, erik, joeri || y || y || y || y || y || y || y || y || y ||
|| '''[wiki:ConvertorModule convertor]''' || joeri roan || y || || || || y || y || y || || y ||
||'''[wiki:AuthModule auth]''' ||robert, erik || y || y || y || y || y || y || y || y || y ||
||'''[wiki:SearchModule search]''' || despoina || y || y || || || || || || || ||
||'''[wiki:MatrixModule matrix]''' || joeri, joris || y || y || || y || || || || || ||
||'''[wiki:LimsModule lims]''' || erik, jessica, joris || || y || y || || || y || || || ||
|| '''[wiki:PipelineModule pipeline]''' || joeri, george, morris || || || y || || y || y || y || y || ||
|| '''ngs_pipeline''' || freerk wil || || || || || || || || || ||
|| '''trac''' || roan despoina || || || || || || || || || ||
|| '''servers''' || ger, robert, freerk, joeri || y || y || y || y || y || y || y || y || y ||

==  ==
==  ==
== = Graphical overview of modules = ==
== {{{#!graphviz ==
digraph g {

  node [shape=box,style=filled,color=white] rankdir="RL"

  subgraph cluster_0 {

  style=filled; color=lightgrey; label = "partner & user groups";

  lifelines; bbmri; nbic; panacea; sysgenet; euratrans; gen2phen; gbic; medgen; fwn_chronobiology; npc_mass_spec_center; gids; col7a1;  chd7; amc_nbic;

  }

subgraph cluster_1 {

  style=filled; color=lightgrey; label = "apps"; biobankcatalog animaldb mutationdb xqtl_workbench ngs_workbench gwas_workbench ms_workbench ma_workbench jamboreecards

}

subgraph cluster_2 {

  style=filled; color=lightgrey; label = "molgenis"; phenoexplorer; db; ui; auth; molgenis; workbench; lims; convertors; datamodels; xgap; pheno;

}

#relations between projects and apps

col7a1 -> mutationdb; chd7 -> mutationdb;

fwn_chronobiology -> animaldb;

bbmri -> biobankcatalog;  nbic -> biobankcatalog; lifelines -> biobankcatalog; gen2phen -> biobankcatalog; gids -> biobankcatalog;

gbic -> xqtl_workbench; panacea -> xqtl_workbench; sysgenet -> xqtl_workbench; euratrans -> xqtl_workbench;

npc_mass_spec_center -> ms_workbench;

bbmri -> ngs_workbench; medgen -> ngs_workbench; medgen -> ngs_workbench;

bbmri -> ma_workbench;

bbmri -> gwas_workbench lifelines -> gwas_workbench; gids -> gwas_workbench; medgen -> gwas_workbench;

amc_nbic -> jamboreecards;

#relations between apps and components

ngs_workbench ->workbench; gwas_workbench -> workbench; xqtl_workbench -> workbench; ms_workbench -> workbench; ma_workbench -> workbench;

biobankcatalog -> phenoexplorer; animaldb -> phenoexplorer;  mutationdb -> phenoexplorer; workbench -> phenoexplorer;

animaldb -> lims; workbench -> lims;

workbench -> convertors;

jamboreecards -> molgenis;

#relations between components and sub-components

molgenis -> auth; molgenis -> db; molgenis -> ui;

lims -> datamodels; workbench -> datamodels; phenoexplorer -> datamodels; convertors -> datamodels;

datamodels -> molgenis; datamodels -> pheno; datamodels -> xgap;

}

}}}