[[TOC(depth=2,MolgenisIntro,MolgenisOnWindows,MolgenisOnUbuntu,MolgenisOnEclipse,MolgenisWorkspaceBasics,MolgenisGeneratorBasics,MolgenisAddressBookExample,MolgenisFromExisting,MolgenisLanguageReference,MolgenisDtd,MolgenisPlugin,MolgenisDatabase,MolgenisEmail,MolgenisBatchLoading,MolgenisRinterface,MolgenisSoapInterface)]]

= The MOLGENIS user guide =
This MolgenisGuide is meant to serve as a starting point for all documentation regarding MOLGENIS usage for application development. The guide is a free document, a collaborative effort, and a part of the  MOLGENIS Project itself.
== Table of Contents ==
Currently available documentation:

 * '''MolgenisIntro''' -- Introduction into MOLGENIS

 * '''User guide'''
   * MolgenisUserInterface -- How to browse and edit data 
   * MolgenisBatchLoading -- How to import datasets from CSV files
   * MolgenisRinterface -- How to connect to your MOLGENIS via R
   * MolgenisSoapInterface -- How connect to your MOLGENIS via web services (in Taverna)
   * Generate a RDF/Sparql interface

 * '''Developer Guide'''
   * ''Installing MOLGENIS development kit''
     * MolgenisOnWindows -- How to setup the generator on Microsoft Windows
     * MolgenisOnUbuntu -- How to setup the generator on Ubuntu Linux
     * MolgenisOnEclipse -- How to get a useful Eclipse installed
   * ''Using the generator''
     * MolgenisWorkspaceBasics -- How to open a MOLGENIS workspace
     * MolgenisGeneratorBasics -- How to use the generator
     * MolgenisAddressBookExample -- How to generate a new MOLGENIS from scratch
     * MolgenisFromExisting -- How to generate a MOLGENIS from an existing database
   * ''Using the XML modelling language''
     * MolgenisLanguageReference -- How to use the language elements
     * MolgenisDtd -- Language definition
   * ''Using the plugin framework''
     * MolgenisPlugin -- How to add a plugin to your MOLGENIS
     * MolgenisDatabase -- How to use the MOLGENIS database backend from your plugin
     * MolgenisEmail -- How to send emails from your MOLGENIS
     * [http://gbic.target.rug.nl:8080/hudson/job/molgenis/ws/3.3/build/javadoc/index.html MolgenisJavaDoc] -- Overview of the MOLGENIS components
     * MolgenisCustomCommand -- How to add custom buttons/dialogs to the generated forms
     
   * Generate a RDF/Sparql interface