= MOLGENIS development manual =

Documentation is moved to [github http://github.com/molgenis/molgenis/wiki]

 * [wiki:MolgenisGuide Table of Contents]
   * '''Introduction'''
     * [wiki:MolgenisIntro Introduction]
     * [wiki:MolgenisToc Detailed table of contents]
   * '''MOLGENIS application overview'''
     * [wiki:MolgenisUserInterface Browsing and editing]
     * [wiki:MolgenisBatchLoading CSV file loading]
     * [wiki:MolgenisRinterface Connecting to R]
     * [wiki:MolgenisSoapInterface Connecting to SOAP web services]
     * [wiki:MolgenisRestInterface Connecting to REST web services using CURL]
     * [wiki:MolgenisAsGalaxyDatasource Molgenis as a datasource for Galaxy]
   * '''Generating your own applications'''
     * [https://github.com/molgenis/molgenis-sdk Download and install development kit ]
     * [wiki:MolgenisAddressBookExample Modeling a new MOLGENIS]
     * [wiki:MolgenisFromExisting Modeling an existing database]
     * [wiki:MolgenisProperties molgenis.properties file]
   * '''Adding plug-ins'''
     * [wiki:MolgenisPlugin Screen plugin]
     * [wiki:MolgenisDatabase Database plugin]
     * [wiki:MolgenisEmail Email plugin]
     * [wiki:MolgenisCustomCommand Command plugin]
     * [http://www.molgenis.org/hudson/job/molgenis/javadoc/ JavaDoc]
   * '''Building on the MOLGENIS framework'''
     * [wiki:MolgenisDatabaseApi Database API]
     * [wiki:MappingDecorator Customize database mapping with MappingDecorator]
     * [wiki:MolgenisJpa Using Java Persistency API (JPA)]
   * '''MOLGENIS Data Modeling Language Reference'''
     * [wiki:MolgenisElement <molgenis> element]
     * [wiki:ModuleElement <module> element]
     * [wiki:EntityElement <entity> element]
     * [wiki:FieldElement <field> element]
     * [wiki:UniqueElement <unique> element]
   * '''MOLGENIS User Interface Modeling Language Reference'''
     * [wiki:FormElement <form> element]
     * [wiki:MenuElement <menu> element]
     * [wiki:PluginElement <plugin> element]
     * [wiki:IncludeElement <include> element]
   * '''MOLGENIS framework API'''
     * [wiki:MolgenisJavaDoc Javadoc library reference]
   * '''Frequently asked questions'''
     * [wiki:MolgenisRenameProject How to change molgenis url from /molgenis_distro to xyz]
     * [wiki:MolgenisServletDecorator How to change the MolgenisServlet, e.g. to add more services]
     * [wiki:ExtendDBModel How to extend an existing database model]
     * [wiki:CaseSensitivityProblems Case sensitivity and issues between windows, linux and mac]
     * [wiki:HyperlinkToForm How to create a hyperlink from plugin to another form]
     * [wiki:HyperlinkToForm How to create a hyperlink from plugin to another form]
     * [wiki:HyperlinkToForm How to create a hyperlink from plugin to another form]
     * [wiki:HyperlinkToForm How to create a hyperlink from plugin to another form]
     * [wiki:HyperlinkToForm How to create a hyperlink from plugin to another form]