== List of Plugins ==
 * Lucene indexing created on molgenis DB tables
   * Location : http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/
     * [http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/DBIndexPlugin.ftl DBIndexPlugin.ftl]
     * [http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/DBIndexPlugin.java DBIndexPlugin.java]
   * Functionality : creation of index , deletion of index , search on index, query expansion
     * Documentation : http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/Lucene_OntoCAT_Indexing_manual.docx
   * Despoina , Dasha
 * Lucene indexing created on molgenis ontocat results on specific terms
   * Location : [http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/DBIndexPlugin.ftl http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/]
     * [http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/OntoCatIndexPlugin2.ftl OntoCatIndexPlugin2.ftl]
     * [http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugins/LuceneIndex/OntoCatIndexPlugin2.java OntoCatIndexPlugin2.java]
   * Functionality: Indexes all ontologies specified in ontologyNamesMap (creation of index ). The ontologies should be downloaded on the computer in ONTOLOGIES_DIRECTORY, searches through the index , deletion of index ,  query expansion
   * Documentation : http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/Lucene_OntoCAT_Indexing_manual.docx
   * Despoina , Dasha

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