= xQTL workbench =
=== Download and run (OSX, UNIX, Windows): ===
[Todo: link to ZIP file with working application Todo: link to ZIP file with working application]

=== Download source, compile and run (OSX/UNIX): ===
Required: [http://ant.apache.org/ Ant], [http://subversion.apache.org/ Subversion], [http://www.java.com/ Java]. Pick either the ''Stable'' or ''Unstable'' checkout.

''Stable''

`svn co ``TODO``svn co ``TODO`

''Unstable''

`svn co -r 8238 http://www.molgenis.org/svn/molgenis/branches/nobinlibs/svn co -r 8239 http://www.molgenis.org/svn/molgenis_apps/trunk/`

`mv nobinlibs molgenismv trunk molgenis_appsant -f molgenis/standalone.xmlmv molgenis/dist/molgenis-4.0.0.jar molgenis_apps/dist/ant -f molgenis_apps/standalone.xml generateant -f molgenis_apps/standalone.xmlcd molgenis_apps/dist/java -jar Application.jar`

__If ant fails with a heapspace error, use:__[[BR]]`export ANT_OPTS=-Xmx512m`

Application running at: http://localhost:8080/molgenis_apps/ [[BR]]Setup database using: http://localhost:8080/molgenis_apps/resetdatabase_4EE1D7A3E73C504183B69F7D20108853

''APP IS BROKEN AT THIS POINT:''

''start running create_tables.sql[[BR]]java.lang.!NullPointerException[[BR]]    at java.io.Reader.<init>(!Reader.java:61) [[BR]]    at java.io.!InputStreamReader.<init>(!InputStreamReader.java:55) [[BR]]    at plugins.emptydb.emptyDatabase.empty(Unknown Source)''

=== Download source into development IDE (OSX, UNIX, Windows): ===
1. Install the ![http://www.eclipse.org Eclipse] IDE[[BR]]2. Install [!http://subclipse.tigris.org/update_1.6.x Subclipse] for Eclipse[[BR]]3. Install JBoss tools ![http://download.jboss.org/jbosstools/updates/development/indigo/ Freemarker] for Eclipse[[BR]]4. Add SVN repository '!http://ww.molgenis.org/svn' [[BR]]5. Checkout /molgenis/trunk[[BR]]6. Checkout /molgenis_apps/trunk