[[TracNav(xQTL)]]

= Run QTL mapping =

go to 'Run QTL mapping'


= old stuff =

== User manual ==
=== Starting a job ===
 * Use to the 'Compute on data' button in the welcome screen or select 'Start and manage jobs' from the main menu
 * Select the compute resource to be used for the new analysis from the bottom and click the 'Create new job' button
 * Select the type of analysis and select a number of sub jobs (click next)
 * Select/provide the parameters for the analysis 

Start the analysis by pressing: 'start', this will take you to the job manager interface

=== Monitoring job progression ===
 * Use to the 'Compute on data' button in the welcome screen or select 'Start and manage jobs' from the main menu
 * Click the 'Job manager' button, this will take you to the job manager interface
 * The Refresh box can be used to speed up / slow down polling interval (5, 15, 30, 60 seconds or off)

=== Analysis administration ===

Go to the Job manager here the following administration task can be performed:

 * Status of all running sub jobs can be monitored by hovering over the sub job box
 * Provenance is kept by storing the analysis parameters in the database these can be viewed by hovering over the hover button
 * Provenance of completed jobs can be removed by clicking the [x] button, NOTE: this will NOT delete results stored into the database
 * Failed sub jobs (status -1) can be resubmitted by clicking on them

In the 'Browse data' section:

 * Raw numeric output can be viewed / edited / deleted from each analysis (Type: Data)
 * Data consistency checks can be seen in the Inspector tab (Type: Data, Sub Types: Inspector)
 * Basic plots can be created / viewed 'on the fly' (Type: Data, Sub Types: Heatmap / Rplot)
 * Image data can be viewed / edited / deleted from each analysis (Type: Image)