| 1 | name = 'BCFtools' |
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| 2 | version = '1.2' |
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| 3 | namelower = name.lower() |
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| 4 | |
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| 5 | homepage = 'http://www.htslib.org/' |
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| 6 | description = """BCFtools — utilities for variant calling and manipulating VCFs and BCFs.""" |
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| 7 | |
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| 8 | toolchain = {'name': 'goolf', 'version': '1.7.20'} |
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| 9 | easyblock = 'MakeCp' |
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| 10 | |
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| 11 | dependencies = [('tabix', '0.2.6')] |
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| 12 | |
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| 13 | # |
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| 14 | # Example URL: |
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| 15 | # https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2 |
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| 16 | # |
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| 17 | source_urls = [('https://github.com/samtools/%s/releases/download/%s/' % (namelower, version))] |
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| 18 | sources = ['%(namelower)s-%(version)s.tar.bz2'] |
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| 19 | |
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| 20 | executables = [namelower, 'plot-vcfstats', 'vcfutils.pl'] |
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| 21 | files_to_copy = [(executables, 'bin'), (['doc/bcftools.1'], 'share/man/man1/')] |
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| 22 | |
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| 23 | sanity_check_paths = { |
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| 24 | 'files': ['bin/%s' % x for x in executables], |
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| 25 | 'dirs': [] |
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| 26 | } |
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| 27 | |
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| 28 | moduleclass = 'bio' |
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