1 | name = 'GATK' |
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2 | version = '3.3-0' |
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3 | |
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4 | homepage = 'http://www.broadinstitute.org/gatk/' |
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5 | description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute |
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6 | to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, |
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7 | with a primary focus on variant discovery and genotyping as well as strong emphasis on |
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8 | data quality assurance. Its robust architecture, powerful processing engine and |
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9 | high-performance computing features make it capable of taking on projects of any size.""" |
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10 | |
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11 | toolchain = {'name': 'dummy', 'version': 'dummy'} |
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12 | easyblock = 'Tarball' |
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13 | |
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14 | # download manually from http://www.broadinstitute.org/gatk/download |
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15 | sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] |
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16 | |
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17 | java = 'Java' |
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18 | javaver = '1.7.0_76' |
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19 | versionsuffix = '-%s-%s' % (java, javaver) |
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20 | dependencies = [(java, javaver)] |
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21 | |
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22 | modloadmsg = """To execute GATK run: java -jar \\${EBROOTGATK}/GenomeAnalysisTK.jar""" |
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23 | |
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24 | sanity_check_paths = { |
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25 | 'files': ["GenomeAnalysisTK.jar"], |
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26 | 'dirs': ["resources"], |
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27 | } |
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28 | |
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29 | moduleclass = 'bio' |
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