| 1 | name = 'tabix' |
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| 2 | version = '0.2.6' |
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| 3 | |
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| 4 | homepage = 'http://sourceforge.net/projects/samtools/files/tabix/' |
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| 5 | description = """Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an index file in.tab.bgz.tbi.""" |
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| 6 | |
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| 7 | toolchain = {'name': 'goolf', 'version': '1.7.20'} |
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| 8 | easyblock = 'MakeCp' |
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| 9 | |
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| 10 | # |
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| 11 | # Example URL: |
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| 12 | # http://downloads.sourceforge.net/project/samtools/tabix/tabix-0.2.6.tar.bz2?ts=1429632321&use_mirror=autoselect |
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| 13 | # |
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| 14 | import time |
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| 15 | seconds_after_epoch = int(time.time()) |
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| 16 | source_urls = [('http://downloads.sourceforge.net/project/samtools/%s' % name, '?ts=%s&use_mirror=autoselect' % seconds_after_epoch)] |
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| 17 | sources = ['%(name)s-%(version)s.tar.bz2'] |
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| 18 | |
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| 19 | files_to_copy = ['TabixReader.java', (['tabix', 'bgzip'], 'bin/'), (['tabix.1'], 'share/man/man1/')] |
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| 20 | |
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| 21 | sanity_check_paths = { |
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| 22 | 'files': ['TabixReader.java', 'bin/tabix', 'bin/bgzip', 'share/man/man1/tabix.1'], |
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| 23 | 'dirs': ['bin', 'share'], |
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| 24 | } |
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| 25 | |
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| 26 | moduleclass = 'tools' |
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