Deliverables	Status	Published as	notes
D.6.1 R-analysis tools for QTL mapping	Done	xQTL workbench
D.6.2 R-analysis tools for eQTL and pQTL mapping	Done	xQTL workbench
D.6.3 R-analysis tools for integration of eQTL, pQTL and QTL networks	Done	wormQTL
D.6.4  Analysis tools for finding regulator of (e/p)QTLs mapping to same locus	Done	wormQTL
D.6.5 Cytoscape network visualisation tools	To be done before June 1, 2012	wormQTL	Joeri/Danny? provide gif files and property files so that users can use Cytoscape to visualize network and annotation
D6.6 Results from analysis run on QTL data	Month45
D6.7 Results from analysis run on eQTL and pQTL data	Month45
D6.8 Results from integrative analysis	Month51
D6.9 Results from extended regulatory analysis	Month51
D.6.10 Requirements analysis	Done	xQTL workbench
D6.11 DSL genetical genomics experiments in C. elegans	Done	wormQTL
D.6.12 Code generator	Done	xQTL workbench
D.6.13 Reusable components	Done	xQTL workbench
D.6.14 Pilot data base	Done	wormQTL
D.6.15 Data loaded into database	May 11, 2012	wormQTL	Yang/Basten/Joeri? will provide a detailed list
D.6.16 Pilot information infrastructure: R-analysis tools connected to database	Done	wormQTL
D.6.17 Pilot information infrastructure: external tools connected to system	ongoing	wormQTL	Done: Rqtl, GenomeBrowser,  R, Excel, etc TODO: We are thinking to include vulva model as tool as well. Input from CAM is seriously needed*.
D.6.18 Pilot analysis workflows: biologists able to run useful workflows	May 16, 2012		Yang is going to  generate 2~3 example workflows. Figures and text will be provided.
D19-25: [CAM]
D.6.26 Cross-link with results from genome-wide association studies on human cancer	Month 51
D.6.27 [CAM]