Changes between Version 15 and Version 16 of ComputeVM

Timestamp:

2015-05-28T12:39:39+02:00 (9 years ago)

Author:

george

Comment:

--

ComputeVM

@@ -9 +9 @@
 == Installation Scripts ==
 
- * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/install_tools.2.sh Tools installation script for NGS analysis workflow]
+ * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/install_tools.2.sh Tools installation script for NGS analysis workflow] After running the tool installation script, your environment should look as follows:
+
+
+{{{
+-------------------------------------- /srv/molgenis/.local/easybuild/modules/all ---------------------------------------
+   Autoconf/2.69-GCC-4.8.4                   Perl/5.20.2-goolf-1.7.20-bare
+   Automake/1.15-GCC-4.8.4                   ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0
+   BCFtools/1.2-goolf-1.7.20                 gompi/1.7.20
+   BEDTools/2.23.0-goolf-1.7.20              goolf/1.7.20
+   BWA/0.7.12-goolf-1.7.20                   hwloc/1.10.1-GCC-4.8.4
+   EasyBuild/2.0.0                           libjpeg-turbo/1.4.0-goolf-1.7.20
+   FFTW/3.3.4-gompi-1.7.20                   libpng/1.6.16-goolf-1.7.20
+   FastQC/0.11.3-Java-1.7.0_51               libreadline/6.3-goolf-1.7.20
+   GATK/3.4-0-Java-1.7.0_51                  libtool/2.4.5-GCC-4.8.4
+   GCC/4.8.4                                 ncurses/5.9-goolf-1.7.20
+   Java/1.7.0_51                             numactl/2.0.10-GCC-4.8.4
+   M4/1.4.17-GCC-4.8.4                       picard/1.130-Java-1.7.0_51
+   NASM/2.11.06-goolf-1.7.20                 snpEff/4.1d-Java-1.7.0_51
+   OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0    tabix/0.2.6-goolf-1.7.20
+   OpenMPI/1.8.4-GCC-4.8.4                   zlib/1.2.8-goolf-1.7.20
+}}}
+
+
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/create_resources.sh Resources download and set-up script for NGS analysis workflow] 
 
@@ -48 +70 @@
 
 Please notice that the size of the image is 5GB.
-