Changes between Version 3 and Version 4 of Courses/ComputationalMolecularBiologyResearch2016/P2


Ignore:
Timestamp:
2016-01-29T19:05:06+01:00 (9 years ago)
Author:
Pieter Neerincx
Comment:

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  • Courses/ComputationalMolecularBiologyResearch2016/P2

    v3 v4  
    1010
    1111Currently, we are analysing over 30.000 public RNA sequencing samples and we want to also include gene quantification for downstream analyses. Due to the large size of this dataset we want to use the fastest and most accurate tool available.
     12
     13== Project 2 ==
     14
     15* Literature study of gene quantification methods
     16* Designing a plan for comparing quality of quantification methods
     17* Comparison of HTSeq count, !FeatureCounts, Kallisto and a selection of other available quantification methods identified in literature
     18
     19== Refs ==
    1220
    13211. Simon Anders, Paul Theodor Pyl, Wolfgang Huber [[BR]]
    … …  
    2331   ''Salmon: Accurate, Versatile and Ultrafast Quantification from RNA-seq Data using Lightweight-Alignment.'' [[BR]]
    2432   bioRxiv (2015): 021592.
    25 
    26 == Project 2 - RNAseq quantification benchmark ==
    27 
    28 * Literature study of gene quantification methods
    29 * Designing a plan for comparing quality of quantification methods
    30 * Comparison of HTSeq count, !FeatureCounts, Kallisto and a selection of other available quantification methods identified in literature