Changes between Version 1 and Version 2 of Courses/ComputationalMolecularBiologyResearch2016
- Timestamp:
- 2016-01-19T14:54:40+01:00 (9 years ago)
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Courses/ComputationalMolecularBiologyResearch2016
v1 v2 21 21 1. [wiki:Courses/ComputationalMolecularBiologyResearch/P1 Improved variant calling for MtDNA] - Pieter / Freerk 22 22 23 === I ncreasing diagnostic yield of fast whole genome diagnostics for new borns on the Neonatal Intensive Care Unit (NICU)===24 2. [wiki:Courses/ComputationalMolecularBiologyResearch/P2 Improved quantification ] - Niek / Freerk23 === Improved quantification for RNA sequencing === 24 2. [wiki:Courses/ComputationalMolecularBiologyResearch/P2 Improved quantification for RNA sequencing] - Niek / Freerk 25 25 26 6. [wiki:Courses/ComputationalMolecularBiologyResearch/P6 Improved variant interpretation by combining gene networks with phenotype networks] - Juha / Joeri 26 === Detection of fusion gene transcripts in RNA sequencing === 27 3. [wiki:Courses/ComputationalMolecularBiologyResearch/P3 Improved variant interpretation by combining gene networks with phenotype networks] - Lennart / Birgit 27 28 28 === Transcriptome analysis to elucidate human fatty liver disease development===29 7. [wiki:Courses/ComputationalMolecularBiologyResearch/P7 Improving Ribo-zero RNA seq data analysis to detect non-coding RNAs in addition to coding RNAs] - Bibi / Jing 29 === Single cell RNA sequencing quantification === 30 4. [wiki:Courses/ComputationalMolecularBiologyResearch/P4 Single cell RNA seq quantification ] - Gerben 30 31 31 === Changes in the gut microbiome ===32 8. [wiki:Courses/ComputationalMolecularBiologyResearch/P8 Analyzing Whole Genome Shotgun data] - Floris / Arnau / Marc Jan33 34 === Non-invasive early detection of (pre-)diabetes using Advanced Glycemic Endproduct detection ===35 9. [wiki:Courses/ComputationalMolecularBiologyResearch/P9 Optimizing decision trees to differentiate between healthy and diseased using parameter optimization] - Martijn / Patrick / Andries / Bernadette36 32 37 33 == Course Schedule == … … 48 44 || 3226 || 302 ||''ERIBA'' building, meeting room, 3rd floor, in the corner and next to auditorium || 49 45 || 3226 || 314 ||''ERIBA'' building, auditorium, 3rd floor || 50 || 3211 || 608 ||''Dentistry'' building, GCC room, 6th floor, at the end of the corridor||46 || 3211 || 519 ||''Dentistry'' building, 5th floor, opposite the secretary || 51 47 || 3211 || flex desks ||''Dentistry'' building, 5th floor || 52 48 || 3226 || flex desks ||''ERIBA'' building, 5th floor || … … 54 50 === Regular events === 55 51 56 || **Day** || **Time**|| **What** || **Where** ||57 ||Mondays ||09:15 - 10:30 ||Research meeting (!Wijmenga/Weersma/Franke groups) ||3226-302 ERIBA meeting room||58 ||Mondays ||10:45 - 11:00 ||Course SCRUM in weeks 2-6 ||3211-608 GCC room ||59 || Mondays ||12:00 - 13:00 ||Literature discussion ||3226-302 ERIBA meeting room ||60 ||Tuesdays ||08:45 - 10:00 ||Research meeting (Entire genetics dept.) ||3226-314 ERIBA Auditorium||61 || Tuesdays ||10:15 - 10:30 ||Course SCRUM in weeks 2-6 ||3211-608 GCC room||62 || Wednesdays ||09:30 - 09:45 ||Course SCRUM in weeks 2-6 ||3211-608 GCC room||63 ||Thursdays ||09:30 - 09:45 ||Course SCRUM in weeks 2-6 ||3211-608 GCC room ||64 ||Fridays ||09:30 - 09:45 ||Course SCRUM in weeks 2-6 ||3211-608 GCC room||52 || **Day** || **Time** || **What** || **Where** || 53 ||Mondays ||09:15 - 09:30 ||Course SCRUM in weeks 2-6 ||TBA instant meeting room 3211 5th floor || 54 ||Mondays ||12:00 - 13:00 ||Research meeting (!Wijmenga/Weersma/Franke groups) ||3226-314 ERIBA auditorium || 55 ||Tuesdays ||08:45 - 10:00 ||Research meeting (Entire genetics dept.) ||3226-314 ERIBA Auditorium || 56 ||Tuesdays ||10:15 - 10:30 ||Course SCRUM in weeks 2-6 ||TBA instant meeting room 3211 5th floor || 57 ||Wednesdays ||09:30 - 09:45 ||Course SCRUM in weeks 2-6 ||TBA instant meeting room 3211 5th floor || 58 ||Thursdays ||09:30 - 09:45 ||Course SCRUM in weeks 2-6 ||TBA instant meeting room 3211 5th floor || 59 ||Thursdays ||12:00 - 13:00 ||Literature club (!Wijmenga/Weersma/Franke groups) ||3226-314 ERIBA auditorium || 60 ||Fridays ||09:30 - 09:45 ||Course SCRUM in weeks 2-6 ||TBA instant meeting room 3211 5th floor || 65 61 66 62 === Week 1 === 67 63 68 **Monday 0 2-02-2015**64 **Monday 01-02-2015** 69 65 70 66 || **When** || **What** || **Where** || … … 80 76 ||15:00 - 15:45 ||Project introduction: Improved variant interpretation (Juha Karjalainen) ||3211-608 GCC room || 81 77 82 ** Tuesday 0 3-02-2015 **78 ** Tuesday 02-02-2015 ** 83 79 84 80 || **When** || **What** || **Where** || … … 93 89 ||14:00 - 17:00 ||R tutorials ||3211-608 GCC room || 94 90 95 ** Wednesday 0 4-02-2015 **91 ** Wednesday 03-02-2015 ** 96 92 97 93 || **When** || **What** || **Where** || … … 107 103 || 18:00 ||Deadline: Preferences for project mailed to course coordinator Morris Swertz || || 108 104 109 ** Thursday 0 5-02-2015 **105 ** Thursday 04-02-2015 ** 110 106 111 107 || **When** || **What** || **Where** || … … 120 116 ||14:00 - 17:00 ||[wiki:Courses/BASH Bash scripting tutorials] ||3211-608 GCC room || 121 117 122 ** Friday 0 6-02-2015 **118 ** Friday 05-02-2015 ** 123 119 124 120 || **When** || **What** || **Where** || … … 131 127 === Weeks 2-5 === 132 128 133 ** Monday 0 9-02-2015 **129 ** Monday 08-02-2015 ** 134 130 135 131 || **When** || **What** || **Where** || … … 141 137 || 17:00 ||Deadline: have experimental design / (validation) plan approved by your supervisors ||3211-608 GCC room || 142 138 143 **From Tuesday 10-02-2015 onwards **139 **From Tuesday 09-02-2015 onwards ** 144 140 145 141 * Regular meetings … … 173 169 ||Morris Swertz ||coordinator ||m.a.swertz AT rug DOT nl || 174 170 ||Pieter Neerincx ||daily supervision ||pieter.neerincx AT gmail DOT com || 175 ||Martijn Dijkstra ||daily supervision ||m.dijkstra.work AT gmail DOT com ||176 ||Elisa Hoekstra ||daily supervision ||e.j.hoekstra AT umcg DOT nl ||177 171 178 172 173
