Changes between Version 4 and Version 5 of Courses/ComputationalMolecularBiologyResearch2016


Ignore:
Timestamp:
2016-01-22T16:10:59+01:00 (9 years ago)
Author:
Pieter Neerincx
Comment:

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  • Courses/ComputationalMolecularBiologyResearch2016

    v4 v5  
    1919
    2020=== Increasing diagnostic yield of fast whole genome diagnostics for new borns on the Neonatal Intensive Care Unit (NICU) ===
    21 1. [wiki:Courses/ComputationalMolecularBiologyResearch/P1 Improved variant calling for MtDNA] - Pieter / Freerk
     211. [wiki:Courses/ComputationalMolecularBiologyResearch2016/P1 Improved variant calling for MtDNA] - Pieter / Freerk
    2222
    2323=== Improved quantification for RNA sequencing ===
    24 2. [wiki:Courses/ComputationalMolecularBiologyResearch/P2 Improved quantification for RNA sequencing] - Niek / Freerk
     242. [wiki:Courses/ComputationalMolecularBiologyResearch2016/P2 Improved quantification for RNA sequencing] - Niek / Freerk
    2525
    2626=== Detection of fusion gene transcripts in RNA sequencing ===
    27 3. [wiki:Courses/ComputationalMolecularBiologyResearch/P3 Analysis of trans-spliced transcripts in RNA-seq data] - Lennart / Birgit
     273. [wiki:Courses/ComputationalMolecularBiologyResearch2016/P3 Analysis of trans-spliced transcripts in RNA seq data] - Lennart / Birgit
    2828
    2929=== Single cell RNA sequencing quantification ===
    30 4. [wiki:Courses/ComputationalMolecularBiologyResearch/P4 Single cell RNA seq quantification ] - Gerben
     304. [wiki:Courses/ComputationalMolecularBiologyResearch2016/P4 Single cell RNA seq quantification ] - Gerben
    3131
     32=== Improved detection of transcription factor binding sites by merging sequence (context) with in vivo DNA accessibility data ===
     335. [wiki:Courses/ComputationalMolecularBiologyResearch2016/P5 Improved DNA Motif finding] - Iris / Pieter
    3234
    3335== Course Schedule ==
    … …  
    9496
    9597|| **When** || **What** || **Where** ||
    96 ||09:30 - 10:15 ||Lecture: Experimental Design (Lude Franke) ||3211-608 GCC room ||
    97 ||10:15 - 10:30 ||Break || ||
    98 ||10:30 - 11:15 ||Lecture: GWAS (Lude Franke) ||3211-608 GCC room ||
    99 ||11:15 - 11:30 ||Break || ||
    100 ||11:30 - 12:15 ||Project introduction: Microbiome anaylses (Floris Imhann) ||3211-608 GCC room ||
    101 ||12:15 - 13:00 ||Lunch break ||
    102 ||13:00 - 13:45 ||R scripting intro (Martijn Dijkstra) ||3211-608 GCC room ||
     98||09:00 - 12:00 ||R-turorial (Annique Claringbould) ||TBA ||
     99||12:00 - 13:00 ||Lunch break ||
     100||13:00 - 13:45 ||Improved DNA Motif finding (Iris Jonkers) ||TBA ||
    103101||13:45 - 14:00 ||Break || ||
    104 ||14:00 - 17:00 ||R scripting tutorials ||3211-608 GCC room ||
    105 || 18:00 ||Deadline: Preferences for project mailed to course coordinator Morris Swertz || ||
     102||14:00 - 14:45 ||Project intro or lecture ||TBA ||
     103||14:45 - 15:00 ||Break || ||
     104||15:00 - 15:45 ||Project intro or lecture ||TBA ||
     105
    106106
    107107** Thursday 04-02-2015 **
    108108
    109109|| **When** || **What** || **Where** ||
    110 ||09:30 - 10:15 ||Lecture: Gene Expression (Lude Franke) ||3211-608 GCC room ||
    111 ||10:15 - 10:30 ||Break || ||
    112 ||10:30 - 11:15 ||Lecture: Integrating Datasets (Lude Franke) ||3211-608 GCC room ||
    113 ||11:15 - 11:30 ||Break || ||
    114 ||11:30 - 12:15 ||Lecture: Data visualization (Lude Franke) ||3211-608 GCC room ||
    115 ||12:15 - 13:00 ||Lunch break ||
     110||09:00 - 12:00 ||R-turorial (Annique Claringbould) ||TBA ||
     111||12:00 - 13:00 ||Lunch break ||
    116112||13:00 - 13:45 ||Bash scripting intro (Lennart Johansson) ||3211-608 GCC room ||
    117113||13:45 - 14:00 ||Break || ||
    118114||14:00 - 17:00 ||[wiki:Courses/BASH Bash scripting tutorials] ||3211-608 GCC room ||
     115|| 18:00 ||Deadline: Preferences for project mailed to course coordinator Pieter Neerincx || ||
    119116
    120117** Friday 05-02-2015 **