Courses

1. Courses/BASH
2. Courses/ComputationalMolecularBiologyResearch2015: Computational Molecular Biology Research
3. Courses/ComputationalMolecularBiologyResearch2015/P1: Increasing diagnostic yield of fast whole genome diagnostics for new …
4. Courses/ComputationalMolecularBiologyResearch2015/P6: Increasing diagnostic yield of fast whole genome diagnostics for new …
5. Courses/ComputationalMolecularBiologyResearch2015/P7: Genome-wide transcriptome analysis for detecting lncRNAs involved in …
6. Courses/ComputationalMolecularBiologyResearch2015/P8: Changes in the gut microbiome: Analyzing Whole Genome Shotgun data
7. Courses/ComputationalMolecularBiologyResearch2015/P9: Non-invasive early detection of (pre-)diabetes using Advanced Glycemic …
8. Courses/ComputationalMolecularBiologyResearch2016: Computational Molecular Biology Research
9. Courses/ComputationalMolecularBiologyResearch2016/P1: Increasing diagnostic yield of fast diagnostics using NGS
10. Courses/ComputationalMolecularBiologyResearch2016/P2: Benchmarking RNAseq gene expression quantification tools
11. Courses/ComputationalMolecularBiologyResearch2016/P3: Analysis of trans-spliced transcripts in RNA seq data
12. Courses/ComputationalMolecularBiologyResearch2016/P4: Single cell RNA seq quantification
13. Courses/ComputationalMolecularBiologyResearch2016/P5: Improved DNA Motif finding
14. Courses/ComputationalMolecularBiologyResearch2016/P6: Detection of RNA-editing sites in human RNA-sequencing data
15. Courses/DataIntegration: Data Sources

Page Index

1. Courses/BASH
2. Courses/ComputationalMolecularBiologyResearch2015: Computational Molecular Biology Research
3. Courses/ComputationalMolecularBiologyResearch2015/P1: Increasing diagnostic yield of fast whole genome diagnostics for new …
4. Courses/ComputationalMolecularBiologyResearch2015/P6: Increasing diagnostic yield of fast whole genome diagnostics for new …
5. Courses/ComputationalMolecularBiologyResearch2015/P7: Genome-wide transcriptome analysis for detecting lncRNAs involved in …
6. Courses/ComputationalMolecularBiologyResearch2015/P8: Changes in the gut microbiome: Analyzing Whole Genome Shotgun data
7. Courses/ComputationalMolecularBiologyResearch2015/P9: Non-invasive early detection of (pre-)diabetes using Advanced Glycemic …
8. Courses/ComputationalMolecularBiologyResearch2016: Computational Molecular Biology Research
9. Courses/ComputationalMolecularBiologyResearch2016/P1: Increasing diagnostic yield of fast diagnostics using NGS
10. Courses/ComputationalMolecularBiologyResearch2016/P2: Benchmarking RNAseq gene expression quantification tools
11. Courses/ComputationalMolecularBiologyResearch2016/P3: Analysis of trans-spliced transcripts in RNA seq data
12. Courses/ComputationalMolecularBiologyResearch2016/P4: Single cell RNA seq quantification
13. Courses/ComputationalMolecularBiologyResearch2016/P5: Improved DNA Motif finding
14. Courses/ComputationalMolecularBiologyResearch2016/P6: Detection of RNA-editing sites in human RNA-sequencing data
15. Courses/DataIntegration: Data Sources

1. Computational Molecular Biology Research
   1. Course Overview
   2. Rating
   3. Projects
      1. Increasing diagnostic yield of fast whole genome diagnostics for new …
      2. Transcriptome analysis to elucidate human fatty liver disease development
      3. Changes in the gut microbiome
      4. Non-invasive early detection of (pre-)diabetes using Advanced Glycemic …
   4. Course Schedule
      1. Venue
      2. Regular events
      3. Week 1
      4. Weeks 2-5
      5. Week 6
      6. Contact
2. Increasing diagnostic yield of fast whole genome diagnostics for new …
   1. Supervisors
   2. Introduction
   3. Projects 1 through 5 - Improved variant calling
3. Increasing diagnostic yield of fast whole genome diagnostics for new …
   1. Supervisors
   2. Introduction
   3. Projects 6 - Improved variant interpretation
4. Genome-wide transcriptome analysis for detecting lncRNAs involved in …
   1. Supervisors
   2. Background
   3. Materials and methods
   4. Aim
5. Changes in the gut microbiome: Analyzing Whole Genome Shotgun data
   1. Supervisors
   2. Introduction
   3. Project 8 - De novo assembly of bacterial genomes or interrogation of …
   4. Literature
6. Non-invasive early detection of (pre-)diabetes using Advanced Glycemic …
   1. Supervisors
   2. Introduction
   3. Project 9 - Optimising decision trees to differentiate between healthy …
7. Computational Molecular Biology Research
   1. Course Overview
   2. Projects
   3. Experimental design a.k.a validation plan
   4. Report and presentation
   5. Rating
   6. Course Schedule
      1. Venue
      2. Regular events
      3. Week 1
      4. Weeks 2-5
      5. Week 6
   7. Contact
8. Increasing diagnostic yield of fast diagnostics using NGS
   1. Supervisors
   2. Introduction
   3. Project 1
9. Benchmarking RNAseq gene expression quantification tools
   1. Supervisors
   2. Introduction
   3. Project 2
   4. Refs
10. Analysis of trans-spliced transcripts in RNA seq data
    1. Supervisors
    2. Introduction
    3. Project 3
    4. Refs
11. Single cell RNA seq quantification
    1. Supervisors
    2. Introduction
    3. Project 4
    4. Refs
12. Improved DNA Motif finding
    1. Supervisors
    2. Introduction
    3. Project 5
13. Detection of RNA-editing sites in human RNA-sequencing data
    1. Supervisors
    2. Introduction
    3. Project 6
14. Data Sources
    1. Verify exome capturing kit annotation
    2. Verify custom capturing kit annotation