| | 1 | == Run D2R server == |
| | 2 | * You will need : |
| | 3 | * jar files. |
| | 4 | * ...src\d2rq\generate_mapping.java as well as dump rdf class. |
| | 5 | * "How to sparql molgenis " |
| | 6 | * '''D2R SERVER START working:''' |
| | 7 | * $ ./d2r-server.bat -p 2020 molgenis.n3 |
| | 8 | * @ http://localhost:2020/snorql/ TADA! |
| | 9 | |
| | 10 | == Log == |
| | 11 | * molgenis_rdf_test from SVN. Problem running. |
| | 12 | * Updated molgenis version . |
| | 13 | * Just that Server Tomcat failed to Start |
| | 14 | * Disease book from Mark , including : |
| | 15 | * Disease_book project |
| | 16 | * Molgenis3_3 |
| | 17 | * ontologiedatabasetest * |
| | 18 | * |
| | 19 | * http://hackathon3.dbcls.jp/ - http://www.ustream.tv/channel/biohackathon2010 (!) |
| | 20 | * '''Translate natural language to sparql ''': |
| | 21 | * "....Is there any way of translating a natural language query to a SPARQL one? or should we need to develop?[[BR]] Some "buffer" layer, which bridges the gap between highly structured language such as SPARQL and unstructured one (i.e., natural language), might be needed. [http://swoogle.umbc.edu/ Swoogle] may be useful. Also, information extraction (IE) technology is crucial to identify a key concept in literature. Natural language processing (NLP) technology used for IE in life science such as [http://www-tsujii.is.s.u-tokyo.ac.jp/medie/ MEDIE] or [http://www-tsujii.is.s.u-tokyo.ac.jp/enju/ Enju] can be used......" |
| | 22 | * next steps : how to map inheritance in the object model to the mapping file - if we can also add our descriptions from xml to the mapping[[BR]] (if it makes sense to embelish the model with more information). We need to generate this file automatically when the MOLGENIS generator runs. |
| | 23 | * The first step generate-mapping file from your source (here mysql database) and this is : |
| | 24 | * (outside molgenis) |
| | 25 | * Build d2r server (there should be a java class to create an instance) |
| | 26 | * (the above may need the appropriate jar includes) |
| | 27 | * log config |
| | 28 | * Class : d2rq.generate_mapping |
| | 29 | * [exec java -cp "$CP" -Xmx256M "-Dlog4j.configuration=${LOGCONFIG}" d2rq.generate_[[BR]]mapping "$@"] |
| | 30 | * D2RQ classes @ d2r-server-0.7/src/de/fuberlin/wiwiss/d2rs |
| | 31 | * ..So now we actually need the class to generate mapping and start Server |
| | 32 | * there is something missing .re-download d2rq server ..and TAD there it is in : .......src\d2rq\generate_mapping.java |
| | 33 | * So call this class! |
| | 34 | |
| | 35 | * Links : |
| | 36 | |
| | 37 | * semantic Web search : http://swoogle.umbc.edu/ |
| | 38 | * [http://hackathon3.dbcls.jp/wiki/Tools SparqlTutorial : http://hackathon3.dbcls.jp/wiki/SparqlTutorial] |
| | 39 | * RDF editor : http://www.cs.rpi.edu/~puninj/rdfeditor/ * |
