Add javascript libs  in molgenis  HVP pilot & Peregrine run test

• Test javascript in hvp_pilot . Works.
• Test prototype in hvp_pilot :
  • prototype.toggle() works,
  • Ajax.Request....? after runing ontocat rest service , worked.
  • Problem when calling ajax.request inside a function .
  • Include them as javascript files in molgenis/src/org/molgenis/framework/ui/userInerface.ftl and also copy the javascript file in a directory inside /molgenis_distro/WebContent
• Jquery problem with Json : (a note from another user)
  • if using ​http://api.jquery.com/jQuery.ajax/ the variable async should be FALSE .
• Problem with mysqld reappeared ...so mysql on mac starts with : mysqlstart alias:
  • alias mysqlstart='sudo mysqld_safe5 -u root '

Peregrine project , memory problems

• Problem with molgenis_rdf_test :just an extra / on MolgenisCompatibleD2RWebappInitListener (filename) .
  • also missing DB ! create addressbook or change db:
    • * create database addressbook; grant all privileges on addressbook.* to molgenis@localhost identified by 'molgenis'; flush privileges; *
    • copy xml , ui from pc --> mac , recompile , fix import jars for Perergine . Ok !
    • Run peregrine by the way ,...seems to suddenly work!
      • * SEVERE: Exception invoking periodic operation: java.lang.OutOfMemoryError: Java heap space:
        • JAVA_OPTS="-Xmx512000000 " -Xmx256m

• Increase heap Memory from project settings...andddd run again ...
• ...conclusion Peregrine should be run in individual project .