Changes between Version 2 and Version 3 of DespoinaLog/2010/10/1


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Timestamp:
2010-10-04T09:51:32+02:00 (14 years ago)
Author:
antonak
Comment:

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  • DespoinaLog/2010/10/1

    v2 v3  
    11 * gcc meeting & Molgenis scrum
     2 * skype about biobanking hackathon demo .
    23 * meeting with Morris about molgenis semantics
    34
    … …  
    56 1. Create a new <field type = "ontology Term" . This will enable browsing like showing a dropdown menu or a wizard that could retreive term (connect to Ontocat)
    67
    7  * Specification (manual) 
    8  * code plan 
     8 * Specification (manual)
     9 * code plan
    910 * Testing
    10 
    11 
    1211
    1312 2. We need multiple molgenis systems using RDF , and connection between them.
    1413
    15  * How the data should look like ? (already n3 is available in molgenis by D2R ) 
    16  * We would like to define relationships  
    17    *  So we need an ontology file that described the data  o        Add an attribute in the molgenis xml file : rdf => rdf relatioship label.... 
    18    * If ontology references are available  --> reach RDF sources     o        (new data type in data model) 
     14 * How the data should look like ? (already n3 is available in molgenis by D2R )
     15 * We would like to define relationships
     16   * So we need an ontology file that described the data  o        Add an attribute in the molgenis xml file : rdf => rdf relatioship label....
     17   * If ontology references are available  --> reach RDF sources     o        (new data type in data model)
    1918
    20  e.g Let’s assume  "sample" in xgap two different entities but contains different synonyms for the same word.We would like to have a linkage between them like an owl file .  Fow example the id field in http://bioportal.bioontology.org/visualize/42838/?conceptid=Spectrometer&jump_to_nav=true  is  http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Spectrometer
     19  e.g Let’s assume  "sample" in xgap two different entities but contains different synonyms for the same word.We would like to have a linkage between them like an owl file .  Fow example the id field in http://bioportal.bioontology.org/visualize/42838/?conceptid=Spectrometer&jump_to_nav=true   is  http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Spectrometer
    2120
    2221 * XML  -→ OWL convert  XML ←? OWL
    23 
    24 
    2522
    2623 3. RDF annotation
    … …  
    3835Install in xgap & phenotype •        Configure •        Adjust •        Test  •        Finish
    3936
    40  * skype about biobanking hackathon demo .
     37 *