wiki:DespoinaLog/2010/12/07

Version 7 (modified by antonak, 14 years ago) (diff)

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Biobanks missing from server

Create from scratch (molgenis distro ) the Biobanks (BBMRI), Fill database

this will be faster and more complete : adjust pheno--> http://gbic.target.rug.nl:8080/Biobanks/molgenis.do

GCC project

Add gcc integrated bbmri project in gbic server.: http://gbic.target.rug.nl:8080/bbmri_gcc/molgenis.do

D2R on gcc model

$$$ mv molgenis-rdf-mapping.n3 molgenis-rdf-mapping_gcc.n3

$$$ d2r-server molgenis-rdf-mapping_gcc.n3

  • Fix missing classes: (despoina)
    • * de.fuberlin.wiwiss.d2rq.D2RQException: Object for d2rq:refersToClassMap not found at d2rq:PropertyBridge map:Biobank_materials (E21) *
    • Biobank material table exists in DB : 
    • * mysql> describe Biobank_materials; 
    • +-----------+---------+------+-----+---------+----------------+
    • | Field     | Type    | Null | Key | Default | Extra          |
    • +-----------+---------+------+-----+---------+----------------+
    • | autoid    | int(11) | NO   | PRI | NULL    | auto_increment |
    • | Materials | int(11) | NO   | MUL | NULL    |                |
    • | Biobank   | int(11) | NO   | MUL | NULL    |                |
    • +-----------+---------+------+-----+---------+------------ *