Attempt to use Matrix implementations in molgenis to import LifeLines data

Data matrix (Joeri's) added :

<form name="Data" entity="Data">

					<menu name="Select">

						<plugin name="Manager" type="plugins.matrix.manager.!MatrixManager" />

						<plugin name="Heatmap" type="plugins.matrix.heatmap.!MatrixHeatmap" />

						<plugin name="Rplot" type="plugins.rplot.!RplotPlugin" />

						<plugin name="Inspector" type="plugins.matrix.inspector.!MatrixInspector" />

						<form name="!OriginalFiles" entity="!OriginalFile">

							<plugin name="View" type="plugins.molgenisfile.!MolgenisFileManager" />
						</form>
					</menu>
		</form>

• add model_database : handwritten/datamodel/shared/data.xml,\
• Run , show but error in import --> NULL --> debug

Joeri's Matrix to List script ​http://www.molgenis.org/svn/gcc/trunk/handwritten/java/matrix/test/converters/MatrixToListTest.java

• problem with exception (NULL in import database )\
  • solved? TODO : update & try !

lifelines (sandbox)

• get it running
• is loaded with data .
• problems with the ui ..solved
• problem with type casting (Integer to Object), solved.
• LL csv data imported successfully in DB .
• TODO : integrate ConverterLifeLinesPheno.java , LoadLifeLinesData?.java in GCC.
  • import org.molgenis.pheno.Code_feature; import pheno.feature.Code;

import org.molgenis.pheno.ObservableFeature; import pheno.feature.ObservableFeature;

import org.molgenis.protocol.Protocol; import pheno.protocol.Protocol;

import org.molgenis.organization.Investigation; import pheno.system.Investigation;

• import jpa : mapper_implementation = jpa, regenerate & run !