Matrix integrated into Biobank & LL data uploaded in biobank (Data)

• Clean up labels (trim - spaces , ()*&^&, characters removed)
• Admin --> Settings added : <plugin name="Settings" type="plugins.system.settings.Settings" />,
  • Set your file directory [path:and path and] saved
• Upload data

LEFT TODO : xgap_deployname.xml xgap.propperties: inmodel database : handwritten/apps/org/molgenis/xgap/xgap_deployname.xml

Merge LL project  to GCC

• Trac error Internal Server Error TracError: IOError: zipimport: can not open file /usr/local/lib/python2.6/dist-packages/TracSubTicketsPlugin-0.1.0-py2.6.egg
  o SubTracTicket? :
  • delete python eggs
  • disable in trac common.ini
  • restart apache
• Update gcc to retrive Joeri's latest version of matrix implementation :
  • after the mapper_implementation = jpa
    • created a fresh workspace with a different gcc version lifelines_workspace
    • error in java.lang.NoClassDefFoundError: Identifiable at java.lang.ClassLoader.defineClass1(Native Method) ...solved
    • null still returned in matrixManager

Update latest version of bbmri@gcc VM7 /BBMRI gcc :

• the server is tested with a lot of searches (TODO : mail to gcc)
• change the left menu categories (user management --> inside admin, all form inside one "data views" category)
• add ontocat logo
• peregine ?
• labels changed .
• BEFORE UPLOAD TO VM7 SERVER :
  • boolean evilLoginBypass = false; (AUTH--> SERVICE--> DATABASELOGIN.JAVA)
  • COPY THE LuceneIndexConfiguration?.VM.properties TO LuceneIndexConfiguration?.BBMRI.properties

revisit d2r-server on latest molgenis.n3 :

• cp ~/Documents/GCC_workspace/gcc/WebContent/WEB-INF/molgenis-rdf-mapping.n3 molgenis-rdf-mapping-latest.n3
• d2r-server -p 8080 molgenis-rdf-mapping-latest.n3

• problem with !DataFile_format (E21)