On comments of bbmri :

• Above the third column 'name'. This should be 'topic'. : This is done
  • done in organization.xml - DO NOT COMMIT!
• Above the fourth column "Investigation". This must have 'cohort'.
  • Also this is done.
• The column 'institutions' is missing. It is added.
  • ok
• The four empty columns are removed
  • ok
• The extra column 'publications' from the previous version is gone. This is re-added.
  • ok

Usability

• The names in the menu (left) should be clarified. Ex. "Data View" to "overview Biobank"
  • ok -
• After logging in, a welcome page with the choice of what the visitor wants to do: search or insert data and explaining how to do it. next todo
• The current "Login" page where the visitor can enter their personal information / change comes at a different location (right)
  • i am not sure what it MEANS ..
• Search for the right "data views" is a filter. This is replaced by a free search function right (possible filter relocation).
• In the left menu under 'Data View': 'Biobank cohorts "and" cohorts ". These are identical. Remove duplication.
  • ok
• There will be a help screen - todo next
• Empty menu items and components for the visitor is not of direct interest to be removed / made invisible. - Ok
• Top left (which now stands _org.Molgenis) is the name of the application. Tentative: "Catalog of Dutch biobank (in due course be linked to the 'Catalog of European biobank" of BBMRI.EU)
  • ok (?)
• The current download function returns a text file that can be read into Excel. The BBMRI-US agency will still let you know if this is workable
  • next todo
• Contact Information Programme Office Add-GB BBMRI iom Margot
  • waiting for details

Other considerations '

• The menu items 'Coordinators'en' Institutions do not contain any meaningful information. These will be standardized and a link will be provided with the biobanking statement. This is a next step after the above in 1. and 2.
  • ok
• A further distinction between clinical and populatiebiobanken biobanks can be made later. For now, the current designation is sufficient.
• The functionality for different user levels exist. This will, in consultation with EN-BBMRI be completed after 1. and 2. adapted
• The content will be updated with the latest version of the summary of biobanks operated by the agency before BBMRI NL-opening wider online

Index Update

• Index Updates to current model (change the fields in the configuration file) - creation locally ok -
  • search test further
  • creation in server failed. - next todo

N3 update

create mapping

./generate-mapping -u molgenis -p molgenis -d com.mysql.jdbc.Driver -o molgenis_rdf_mapping_GCC.n3 jdbc:mysql://127.0.0.1/bbmri works locally & on server ! 

New plugin in molgenis that creates n3 files: refer to ​http://www4.wiwiss.fu-berlin.de/bizer/d2rq/javadoc/de/fuberlin/wiwiss/d2rq/vocab/D2RQ.html