Changes between Version 35 and Version 36 of Documentation


Ignore:
Timestamp:
2013-09-25T07:49:46+02:00 (11 years ago)
Author:
Roan Kanninga
Comment:

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  • Documentation

    v35 v36  
    11[[TOC()]]
     2
    23= Documentation =
    3 
    44Welcome to documentation on the MOLGENIS software suite.
    55
    66== Software ==
    7 * '''MOLGENIS framework'''
    8   * [wiki:MolgenisGuide Developer Manual]
    9 * '''xQTL workbench'''
     7 * '''MOLGENIS framework'''
     8   * [wiki:MolgenisGuide Developer Manual]
     9 * '''xQTL workbench'''
    1010   * [wiki:xQTL using xQTL workbench for multi-level QTL mapping]
    1111
    1212== Internal ==
    13 * [wiki:GccOperatingProcedures Standard Operating Procedures (authorized users only)]
     13 * [wiki:GccOperatingProcedures Standard Operating Procedures (authorized users only)]
    1414
    1515= All our standard operation procedures =
    16 
    17 
    1816See MolgenisAppStories for requirements.
    1917
    2018== Molgenis Apps deployment SOPs ==
    21 
    2219Stories that hold for any 'app':
    2320
    24  * [wiki:MolgenisServers] - listing of MOLGENIS servers
     21 * MolgenisServers - listing of MOLGENIS servers
    2522 * [http://www.molgenis.org/wiki/SopInstallationTomcat7#SopInstallationTomcat7 How to deploy Tomcat7]
    26  * [http://www.molgenis.org/wiki/SopInstallationDeployServerInHudson#SopInstallationDeployServerInHudson Deploy server in Hudson]
     23 * [http://www.molgenis.org/wiki/SopInstallationDeployServerInJenkins#SopInstallationDeployServerInJenkins Deploy server in Jenkins] 
    2724 * [wiki:SopCreateMolgenisVM Create Molgenis VM] - How to request and configure a new copy of 'molgenis gold'
    28  * [wiki:SopDeployMolgenisApps] - how to automatically check-out, build and run one of the molgenis_apps
    29  * [wiki:SopMolgenis] - how to check out and build a molgenis app
    30  * [wiki:SopLoadData] - how to load data into your app install
     25 * SopDeployMolgenisApps - how to automatically check-out, build and run one of the molgenis_apps
     26 * SopMolgenis - how to check out and build a molgenis app
     27 * SopLoadData - how to load data into your app install
    3128 * [wiki:SopUseJQuerytree] - how to find, instantiate and use
    32  * [wiki:SopGenericImporter] - how to use, how to import, how the interface works
    33  * [wiki:SopNightlyBuild] - how to create a nightly build
    34  * [wiki:SopUseGenericImporter] - how to use GenericImporter
    35  * [wiki:SopUpdateBbmriApp] - How to Update Bbmri App
    36  * [wiki:MysqlSetup Mysql setup] 
    37  * [SopPrintScrum How to print the scrum cards]
     29 * SopGenericImporter - how to use, how to import, how the interface works
     30 * SopNightlyBuild - how to create a nightly build
     31 * SopUseGenericImporter - how to use GenericImporter
     32 * SopUpdateBbmriApp - How to Update Bbmri App
     33 * [wiki:MysqlSetup Mysql setup]
     34 * [wiki:SopPrintScrum How to print the scrum cards]
    3835 * [omxManual Omx manual]
    3936 * [wiki:SopMolgenisRelease how to do a molgenis release]
    4037
    4138== Using the GCC compute cluster ==
    42 
    4339 * [wiki:SopUseGccCluster SOP Users] - How to use the GCC cluster
    44  * [wiki:GccSopNewUser SOP New User] - Creating a new user account for the GCC infrastructure 
     40 * [wiki:GccSopNewUser SOP New User] - Creating a new user account for the GCC infrastructure
    4541 * [wiki:GccCluster SOP Admins] - Configuration details of the GCC cluster
    4642
    … …  
    6258 * [http://www.molgenis.org/wiki/GccTupleTable JQGridPluginProtocol] - how to use the Tuple Table viewer
    6359
    64 * [http://www.molgenis.org/wiki/ConnectToXeroxPrintersForMac ConnectToXeroxPrintersForMac]
    65 
     60 * [http://www.molgenis.org/wiki/ConnectToXeroxPrintersForMac ConnectToXeroxPrintersForMac]
    6661
    6762== MOLGENIS/compute SOPs ==
    68 
    6963 * DeployDependencies - How to deploy tools and resources for your workflows on different backends (Grid, PBS cluster, etc.)