Changes between Version 47 and Version 48 of Documentation


Ignore:
Timestamp:
2013-09-26T13:46:32+02:00 (11 years ago)
Author:
Pieter Neerincx
Comment:

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  • Documentation

    v47 v48  
    11[[TOC()]]
    22
    3 = Documentation =
    4 Welcome to documentation on the MOLGENIS software suite.
     3Project / group specific documentation at the bottom of this page...
    54
    6 = Molgenis OMX applications SOPs =
    7  * SopMolgenis - how to check out and build a molgenis app
    8  * [wiki:omxManual Omx manual]
    9  * [wiki:SopMolgenisRelease how to do a molgenis release]
    10 === Servers / VMs / Jenkins / Tomcat ===
    11  * MolgenisServers - listing of MOLGENIS servers
    12  * [http://www.molgenis.org/wiki/SopInstallationTomcat7#SopInstallationTomcat7 How to deploy Tomcat7]
    13  * [http://www.molgenis.org/wiki/SopInstallationDeployServerInJenkins#SopInstallationDeployServerInJenkins Deploy server in Jenkins] 
    14  * [wiki:SopCreateMolgenisVM Create Molgenis VM] - How to request and configure a new copy of 'molgenis gold'
    15  * SopNightlyBuild - how to create a nightly build
    16  * [wiki:MysqlSetup Mysql setup]
     5= Documentation relevant for multiple groups / projects =
    176
    18 = GCC compute cluster =
     7 * [wiki:RequestAccount] - How to request an account for access to GCC maintained infrastructure
     8 * [wiki:DataSharing] - How to up-/download data via SFTP
     9 * [wiki:TransparentMultiHopSSH] - How to connect via the proxy
     10
     11== Servers (VMs) / Jenkins / Tomcat / MySQL ==
     12 * [wiki:MolgenisServers] - List of all VMs in our cloud.
     13 * [wiki:SopCreateMolgenisVM Create Molgenis VM] - How to request and configure a new Molgenis VM cloned from the 'molgenis gold' template.
     14 * [wiki:SopInstallationTomcat7] - How to deploy Tomcat7 on a Molgenis VM.
     15 * [wiki:MysqlSetup MySQL setup]
     16 * [wiki:SopInstallationDeployServerInJenkins#SopInstallationDeployServerInJenkins Deploy server in Jenkins] 
     17 * [wiki:SopNightlyBuild] - How to create a nightly build
     18
     19== Documentation on the MOLGENIS software suite ==
     20 * MOLGENIS OMX applications SOPs
     21   * [wiki:SopMolgenis] - How to check out and build a MOLGENIS app
     22   * [wiki:omxManual OMX Manual]
     23   * [wiki:SopMolgenisRelease] - How to create a MOLGENIS release
     24 * MOLGENIS framework
     25   * [wiki:MolgenisGuide Developer Manual]
     26 * xQTL workbench
     27   * [wiki:xQTL using xQTL workbench for multi-level QTL mapping]
     28 * MOLGENIS/compute SOPs
     29   * DeployDependencies - How to deploy tools and resources for your workflows on different backends (Grid, PBS cluster, etc.)
     30
     31== GCC HPC cluster ==
    1932 * [wiki:SopUseGccCluster SOP Users] - How to use the GCC cluster
    2033 * [wiki:GccSopNewUser SOP New User] - Creating a new user account for the GCC infrastructure
    21  * [wiki:GccCluster SOP Admins] - Configuration details of the GCC cluster
     34 * [wiki:GccCluster SOP Admins] - Configuration details of the GCC cluster for admins
    2235
    23 = Internal =
     36= Documentation for specific projects / groups =
     37
     38== Internal GCC SOPs ==
    2439 * [wiki:GccOperatingProcedures Standard Operating Procedures (authorized users only)]
    25 = Legacy SOPs ==
    26  * SopUpdateBbmriApp - How to Update Bbmri App
     40 * [wiki:SopPrintScrum How to print the scrum cards]
     41 * [wiki:ConnectToXeroxPrintersForMac Connect to Xerox printers for Mac OS X]
    2742
    28 = Handy SOPs =
    29  * [wiki:SopPrintScrum How to print the scrum cards]
    30  * [http://www.molgenis.org/wiki/ConnectToXeroxPrintersForMac ConnectToXeroxPrintersForMac]
     43== LifeLines SOPs ==
     44 * [wiki:SopConvertLifeLinesGenoData] - how to prepare the geno data from release 3 + imputation (2 sets)
    3145
    32 
    33 
    34 = LifeLines SOPs =
    35  * SopConvertLifeLinesGenoData - how to prepare the geno data from release 3 + imputation (2 sets)
    36 
    37 = Software =
    38  * '''MOLGENIS framework'''
    39    * [wiki:MolgenisGuide Developer Manual]
    40  * '''xQTL workbench'''
    41    * [wiki:xQTL using xQTL workbench for multi-level QTL mapping]
    42 
    43 = MOLGENIS/compute SOPs =
    44  * DeployDependencies - How to deploy tools and resources for your workflows on different backends (Grid, PBS cluster, etc.)
     46== BBMRI SOPs ==
     47 * [wiki:SopUpdateBbmriApp] - How to Update BBMRIApp (Legacy SOP)