| | 1 | [[BlogList(recent=5, max_size=250, format=float, heading=News)]] |
| | 2 | |
| | 3 | = Welcome to the Genomics Coordination Centre = |
| | 4 | The center for genomics databases and analysis tools, courses and workshops. See AboutGcc |
| | 5 | |
| | 6 | {{{#!td |
| | 7 | |
| | 8 | = Databases = |
| | 9 | * [http://www.molgenis.org MOLGENIS] - biosoftware toolkit |
| | 10 | * [http://www.xgap.org XGAP] - GWAS and GWL |
| | 11 | * [http://www.animaldb.org AnimalDB] - animal observation |
| | 12 | * [http://gbic.target.rug.nl/trac/lsdb MutationDB] - mutations and patients |
| | 13 | * [http://www.phenoflow.org Pheno] - phenotype observations |
| | 14 | * [http://gbic.target.rug.nl/trac/mage MAGE] - microarray database |
| | 15 | |
| | 16 | }}} |
| | 17 | {{{#!td |
| | 18 | |
| | 19 | = Analysis = |
| | 20 | * [RqtlPackage R/QTL] - R package QTL analysis |
| | 21 | * [http://www.ontocat.org OntoCAT] - ontology toolkit |
| | 22 | * [DesignGg Design GG] - experimental design of QTL experiments |
| | 23 | * [GenomicIslandsAnalysis Genomic Islands] - genomic islands |
| | 24 | * [wiki:PeakML] format - file format for mass spectrometry data |
| | 25 | * MzMatch - pipeline for mass spectrometry experiments in the area of metabolomics |
| | 26 | }}} |
| | 27 | |------------------- |
| | 28 | {{{#!td |
| | 29 | |
| | 30 | = Intranet = |
| | 31 | * GccPlugins - overview of GCC plugins |
| | 32 | * GccMeetings - Notes on our weekly work meetings |
| | 33 | * GccProjects - Matrix of ongoing projects and their relationships |
| | 34 | * GccManuals - How to use the software and servers that we have |
| | 35 | * GccLinks - Hyperlinks to papers and websites of interest |
| | 36 | * GccTeam - Members of the group |
| | 37 | * GccCalendar - Meetings etc |
| | 38 | * GccGroup - Our mailing list and group discussion site |
| | 39 | * GccServers - How to connect to our servers |
| | 40 | * GccIfolder - How to connect to our iFolder |
| | 41 | * GccLogs - Logbooks of GCC people |
| | 42 | |
| | 43 | }}} |
| | 44 | {{{#!td valign="top" |
| | 45 | |
| | 46 | = Collaborations = |
| | 47 | * [http://gbic.biol.rug.nl GBIC] - Groningen Bioinformatics Center |
| | 48 | * [http://www.geneticsgroningen.nl Genetics] - UMCG genetics department |
| | 49 | * [http://www.rug.nl/cit/index] - Groningen Center for Information Technology |
| | 50 | * [http://www.bbmriwiki.org BBMRI.NL] - Bioinformatics for Biobanking project |
| | 51 | * [http://wiki.nbic.nl NBIC] - Netherlands BioInformatics Center |
| | 52 | * [http://www.lifelines.nl LifeLines] - 30yr/165.000 people cohort study |
| | 53 | * [http://www.ebi.ac.uk EBI] - European Bioinformatics Institute |
| | 54 | * [http://www.gen2phen.org EU-GEN2PHEN] - Genotype to Phenotype project |
| | 55 | * [http://www.casimir.ac.uk CASIMIR] - Coordination and Sustainability of International Mouse Informatics Resources |
| | 56 | * [http://www.helmholtz-hzi.de/en/research/host_resistance_and_susceptibility/infection_genetics/externally_funded_projects/sysgenet/ SYSGENET] - European systems genetics network |
| | 57 | |
| | 58 | }}} |
