Changes between Version 4 and Version 5 of HPC_deploy


Ignore:
Timestamp:
2015-11-16T12:54:44+01:00 (9 years ago)
Author:
Roan Kanninga
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • HPC_deploy

    v4 v5  
    3232moduleclass = 'bio'
    3333}}}
    34 '''name''' and '''version''' are pretty clear [[BR]]
    35 '''homepage''' and '''description'''; are recommended when releasing a future release of the tool. [[BR]]
    36 '''toolchain'''; can be left like it is in the example (only when multiple tools need to be installed before this, you should use toolchain (see manual online of Easybuild). [[BR]]
    37 '''easyblock'''; this is the type of data, tar.gz = ‘Tarball’ , executable = ‘Binary’ . All the different easyblocks are [https://github.com/hpcugent/easybuild-easyblocks/tree/master/easybuild/easyblocks/generic here]  [[BR]]
    38 If there any '''dependencies''' (in this case Molgenis-Compute), you put it in the name of your eb file (name will look like this: NGS_DNA-3.1.2-Molgenis-Compute-v15.04.1-Java-1.7.0_80)  [[BR]]
    39 '''Using variables''' instead of typing the same string 5 times is done with %s and then between () the name of the variable. [[BR]]
    40 One necessary step is to set '''sanity_check_paths''', this is a check whether the file is unpacked/installed correctly.  [[BR]]
    41 All the installed eb configs are put automatically in the /apps/modules/all folder, but with '''moduleclass''' you can specify an extra module path.  [[BR]]
     34 * '''name''' and '''version''' are pretty clear [[BR]]
     35 * '''homepage''' and '''description'''; are recommended when releasing a future release of the tool. [[BR]]
     36 * '''toolchain'''; can be left like it is in the example (only when multiple tools need to be installed before this, you should use toolchain (see manual online of Easybuild). [[BR]]
     37 * '''easyblock'''; this is the type of data, tar.gz = ‘Tarball’ , executable = ‘Binary’ . All the different easyblocks are [https://github.com/hpcugent/easybuild-easyblocks/tree/master/easybuild/easyblocks/generic here]  [[BR]]
     38 * If there any '''dependencies''' (in this case Molgenis-Compute), you put it in the name of your eb file (name will look like this: NGS_DNA-3.1.2-Molgenis-Compute-v15.04.1-Java-1.7.0_80)  [[BR]]
     39 * '''Using variables''' instead of typing the same string 5 times is done with %s and then between () the name of the variable. [[BR]]
     40 * One necessary step is to set '''sanity_check_paths''', this is a check whether the file is unpacked/installed correctly.  [[BR]]
     41 * All the installed eb configs are put automatically in the /apps/modules/all folder, but with '''moduleclass''' you can specify an extra module path.  [[BR]]
    4242N.B. when typing the command module avail on the cluster will only display the non-all modules. So specifying an extra moduleclass is necessary to find your module back in module avail  [[BR]]
    4343