Changes between Initial Version and Version 1 of MetaNetwork


Ignore:
Timestamp:
2010-10-01T23:38:13+02:00 (11 years ago)
Author:
trac
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • MetaNetwork

    v1 v1  
     1= MetaNetwork =
     2MetaNetwork is a statistical package in R that also comes with an example data set. This data set has been used in the explanation of the XgapFormat.
     3
     4Read more in the MetaNetwork publication:
     5
     6== !MetaNetwork: a computational protocol for the genetic study of metabolic networks ([http://www.ncbi.nlm.nih.gov/pubmed/17406631 pubmed]) ==
     7Fu J, Swertz MA, Keurentjes JJ, Jansen RC.
     8Nature Protocols 2(3):685-94.
     9
     10We here describe the !MetaNetwork protocol to reconstruct metabolic networks using metabolite abundance data from segregating populations. !MetaNetwork maps metabolite quantitative trait loci (mQTLs) underlying variation in metabolite abundance in individuals of a segregating population using a two-part model to account for the often observed spike in the distribution of metabolite abundance data. !MetaNetwork predicts and visualizes potential associations between metabolites using correlations of mQTL profiles, rather than of abundance profiles. Simulation and permutation procedures are used to assess statistical significance. Analysis of about 20 metabolite mass peaks from a mass spectrometer takes a few minutes on a desktop computer. Analysis of 2,000 mass peaks will take up to 4 days. In addition, !MetaNetwork is able to integrate high-throughput data from subsequent metabolomics, transcriptomics and proteomics experiments in conjunction with traditional phenotypic data. This way !MetaNetwork will contribute to a better integration of such data into systems biology.