| 4 | | * '''AppCatalogue''' - select and browse data |
| 5 | | * StoryCreateBiobankCatalog - load protocols, measurements, categories |
| 6 | | * StoryBrowseCatalogAndSelectFeatures - User can browse and select features in a treeview; Selected features are put in shopping cart. |
| 7 | | * StoryRequestData - User can request access to data set; Includes summary of research, power calculation, etc. |
| 8 | | * StoryApproveRequest - LifeLines approves request; selected features and targets is passed to scenario 2. |
| | 4 | * '''AppCatalogue''' |
| | 5 | * StoryCreateBiobankCatalog |
| | 6 | * StoryBrowseCatalogAndSelectFeatures |
| | 7 | * StoryRequestData |
| | 8 | * StoryApproveRequest |
| 10 | | * '''AppInstaller''' - SOP to install research portal |
| 11 | | * StoryConvertPhenoData - prepare the pheno data in pheno format |
| 12 | | * StoryImputeGenoData - impute the raw genotype data (future) |
| 13 | | * StoryConvertGenoData - prepare geno data set(s) in binary and plink format |
| 14 | | * StoryNewMolgenisVm - create VM with the app and autoload data, users, firewall. |
| 15 | | * (LifeLInes) StoryLinkWomToVm - coordinate with UMCG-ICT to link VM to WOM |
| | 10 | * '''AppInstaller''' |
| | 11 | * StoryConvertPhenoData |
| | 12 | * StoryImputeGenoData |
| | 13 | * StoryConvertGenoData |
| | 14 | * StoryNewMolgenisVm |
| | 15 | * (LifeLInes) StoryLinkWomToVm |
| 17 | | * '''AppResearchPortal''' - user can access data via research portal |
| 18 | | * StoryBrowseAndSelectFeatures - User can browse and select features in a treeview; Selected features are put in shopping cart. |
| 19 | | * StoryViewAndFilterInMatrix - user can browse and filter data in matrix view; repeated values can be made cols/rows |
| 20 | | * StoryDownloadAsPlink - user can select one feature and download with associated genotypes |
| 21 | | * StoryDownloadAsSpss - user can select multiple features and download as spss |
| 22 | | * StoryRunGwasAnalysis - user can select one feature and then choose to run GWAS automatically (future) |
| | 17 | * '''AppResearchPortal''' |
| | 18 | * StoryBrowseAndSelectFeatures |
| | 19 | * StoryViewAndFilterInMatrix |
| | 20 | * StoryDownloadAsPlink |
| | 21 | * StoryDownloadAsSpss |
| | 22 | * StoryRunGwasAnalysis |
| | 23 | |
