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Changes between Version 22 and Version 23 of MolgenisComponents

Timestamp:: 2010-12-11T12:38:37+01:00 (14 years ago)
Author:: Morris Swertz
Comment:: --

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MolgenisComponents

-                      v22
+                      v23
+= MOLGENIS components =
+= MOLGENIS suite overview: modules and products =
+Here you can find summaries and links on the components listed in the ticket system. In the software, these components become packages. For example: org.molgenis.db for shared pacakes or org.col7a1 for application specific packages. We distinguish two groups of components as listed below. Also the use of '''keywords''' is explained which we use to clarify relationships from shared packages to application. For example: tickets in the 'auth' component can be marked with keywords 'animaldb' to enable tracking by the animaldb team.
+Here you can find summaries and links on the components listed in the ticket system. In the software, these components become packages. For example: org.molgenis.db for shared pacakes or org.col7a1 for application specific packages. We distinguish two groups of components as listed below. Also the use of '''keywords''' is explained which we use to clarify relationships from shared packages to application. For example: tickets in the 'auth' component can be marked with keywords 'animaldb' to enable tracking by the animaldb team.
+|| ||end product: || '''[wiki:PhenoFlow biobankcatalog]''' || '''[wiki:AnimaldbStart animaldb]''' || '''ngs''' || '''[wiki:MutationStart mutationdb]''' || '''[wiki:XgapStart xqtl]''' || '''[wiki:ImputationStart gwas]''' || '''mass_spec''' || '''[wiki:MageStart microarray]''' ||
+|| || lead: || joris, despoina || erik || freerk, jessica, wil || robert || joeri, danny || alex, roan || george || alex jessica ||
+|| [[BR]][[BR]][[BR]]module: || users:[[BR]][[BR]][[BR]] || lifelines [[BR]]bbmri [[BR]]bioshare[[BR]]nbic || fwn[[BR]][[BR]][[BR]] || bbrmi [[BR]]medgen[[BR]]nbic[[BR]] || nbic [[BR]]col7a1 [[BR]]chd7[[BR]] || panacea [[BR]]euratrans[[BR]]bioshare[[BR]]sysgenet || lifelines[[BR]]bioshare[[BR]]medgen[[BR]] || nbic[[BR]]npc[[BR]]fwn[[BR]] || bbmri[[BR]][[BR]][[BR]] ||
+|| '''db''' || morris, joris || y || y || y || y || y || y || y || y ||
+|| '''ui''' || erik || y || y || y || y || y || y || y || y ||
+|| '''datamodel''' || morris, erik, joeri || y || y || y || y || y || y || y || y ||
+|| '''convertor''' || joeri roan || y || || || || y || y || || y ||
+||'''auth''' ||robert, erik || y || y || y || y || y || y || y || y ||
+||'''search''' || despoina || y || y || || || || || || ||
+||'''matrix''' || joeri, joris || y || y || || y || || || || ||
+||'''lims''' || erik, jessica, joris || || y || y || || || || || ||
+|| '''pipeline''' || joeri, george, morris || || || y || || y || y || y || ||
+|| '''ngs_pipeline''' || freerk wil || || || || || || || || ||
+|| '''trac''' || roan despoina || || || || || || || || ||
+|| '''servers''' || ger, robert, freerk, joeri || y || y || y || y || y || y || y || y ||
 {{{#!graphviz
 digraph g {
-        node [shape=box,style=filled,color=white]
-        rankdir="RL"
-subgraph cluster_0 {
-                style=filled;
-                color=lightgrey;
-                label = "partner & user groups";
+                lifelines;
+                bbmri;
+                nbic;
+                panacea;
+                sysgenet;
+                euratrans;
+                gen2phen;
+                gbic;
+                medgen;
+                fwn_chronobiology;
+                npc_mass_spec_center;
+                gids;
+                col7a1;
+                chd7;
+                amc_nbic;
+                seq_facility;
+}
+  node [shape=box,style=filled,color=white] rankdir="RL"
+  subgraph cluster_0 {
+  style=filled; color=lightgrey; label = "partner & user groups";
+  lifelines; bbmri; nbic; panacea; sysgenet; euratrans; gen2phen; gbic; medgen; fwn_chronobiology; npc_mass_spec_center; gids; col7a1;  chd7; amc_nbic;
+  }
 subgraph cluster_1 {
+                style=filled;
+                color=lightgrey;
+                label = "apps";
+                biobankatlas
+                animaldb
+                mutationdb
+                xqtl_workbench
+                ngs_workbench
+                gwas_workbench
+                ms_workbench
+                ma_workbench
+                jamboreecards
+  style=filled; color=lightgrey; label = "apps"; biobankexplorer animaldb mutationdb xqtl_workbench ngs_workbench gwas_workbench ms_workbench ma_workbench jamboreecards
+}
 subgraph cluster_2 {
+                style=filled;
+                color=lightgrey;
+                label = "molgenis";
+                phenoexplorer;
+                db;
+                ui;
+                auth;
+                molgenis;
+                workbench;
+                lims;
+                convertors;
+                datamodels;
+                xgap;
+                pheno;
+  style=filled; color=lightgrey; label = "molgenis"; phenoexplorer; db; ui; auth; molgenis; workbench; lims; convertors; datamodels; xgap; pheno;
+}
+#relations between projects and apps
+col7a1 -> mutationdb;
+chd7 -> mutationdb;
+#relations between projects and apps col7a1 -> mutationdb; chd7 -> mutationdb;
 fwn_chronobiology -> animaldb;
+bbmri -> biobankatlas;
+nbic -> biobankatlas;
+lifelines -> biobankatlas;
+gen2phen -> biobankatlas;
+gids -> biobankatlas;
+bbmri -> biobankatlas;  nbic -> biobankatlas; lifelines -> biobankatlas; gen2phen -> biobankatlas; gids -> biobankatlas;
+gbic -> xqtl_workbench;
+panacea -> xqtl_workbench;
+sysgenet -> xqtl_workbench;
+euratrans -> xqtl_workbench;
+gbic -> xqtl_workbench; panacea -> xqtl_workbench; sysgenet -> xqtl_workbench; euratrans -> xqtl_workbench;
 npc_mass_spec_center -> ms_workbench;
+bbmri -> ngs_workbench;
+seq_facility -> ngs_workbench;
+medgen -> ngs_workbench;
+bbmri -> ngs_workbench; medgen -> ngs_workbench; medgen -> ngs_workbench;
 bbmri -> ma_workbench;
+bbmri -> gwas_workbench
+lifelines -> gwas_workbench;
+gids -> gwas_workbench;
+medgen -> gwas_workbench;
+bbmri -> gwas_workbench lifelines -> gwas_workbench; gids -> gwas_workbench; medgen -> gwas_workbench;
 amc_nbic -> jamboreecards;
+#relations between apps and components
+ngs_workbench ->workbench;
+gwas_workbench -> workbench;
+xqtl_workbench -> workbench;
+ms_workbench -> workbench;
+ma_workbench -> workbench;
+#relations between apps and components ngs_workbench ->workbench; gwas_workbench -> workbench; xqtl_workbench -> workbench; ms_workbench -> workbench; ma_workbench -> workbench;
+biobankatlas -> phenoexplorer;
+animaldb -> phenoexplorer;
+mutationdb -> phenoexplorer;
+workbench -> phenoexplorer;
+biobankatlas -> phenoexplorer; animaldb -> phenoexplorer;  mutationdb -> phenoexplorer; workbench -> phenoexplorer;
+animaldb -> lims;
+workbench -> lims;
+animaldb -> lims; workbench -> lims;
 workbench -> convertors;
 …
 jamboreecards -> molgenis;
+#relations between components and sub-components
+molgenis -> auth;
+molgenis -> db;
+molgenis -> ui;
+#relations between components and sub-components molgenis -> auth; molgenis -> db; molgenis -> ui;
+lims -> datamodels;
+workbench -> datamodels;
+phenoexplorer -> datamodels;
+convertors -> datamodels;
+lims -> datamodels; workbench -> datamodels; phenoexplorer -> datamodels; convertors -> datamodels;
+datamodels -> molgenis;
+datamodels -> pheno;
+datamodels -> xgap;
+datamodels -> molgenis; datamodels -> pheno; datamodels -> xgap;
+}
 }}}
 == Shared components ==
 these are reusable models (or 'semi-finished module) used across multiple molgenis applications.
 …
 == Dependencies and other keywords ==
 Obviously there can be a dependency between components. For example, 'animaldb' depends on 'auth'. To make this dependency visible and queryable we use the keywords field. For example: if 'animaldb' and 'col7a1' both have a dependency on a ticket in the auth component this ticket will have keyewords 'animaldb col7a1'.