| 9 | | || '''[ |
| 10 | | || '''[ |
| 11 | | ||'''[ |
| 12 | | ||'''[ |
| 13 | | ||'''[ |
| 14 | | ||'''[ |
| 15 | | || '''[ |
| | 9 | || '''[wiki:DataModel datamodel]''' || morris, erik, joeri || y || y || y || y || y || y || y || y || |
| | 10 | || '''[wiki:ConvertorModule convertor]''' || joeri roan || y || || || || y || y || || y || |
| | 11 | ||'''[wiki:AuthModule auth]''' ||robert, erik || y || y || y || y || y || y || y || y || |
| | 12 | ||'''[wiki:SearchModule search]''' || despoina || y || y || || || || || || || |
| | 13 | ||'''[wiki:MatrixModule matrix]''' || joeri, joris || y || y || || y || || || || || |
| | 14 | ||'''[wiki:LimsModule lims]''' || erik, jessica, joris || || y || y || || || || || || |
| | 15 | || '''[wiki:PipelineModule pipeline]''' || joeri, george, morris || || || y || || y || y || y || || |
| | 19 | |
| | 20 | |
| | 21 | |
| | 22 | == Shared components == |
| | 23 | these are reusable models (or 'semi-finished module) used across multiple molgenis applications. |
| | 24 | |
| | 25 | ||'''component''' ||'''summary''' ||'''used''' || |
| | 26 | ||db ||molgenis database backend including mysql and jpa ||all systems || |
| | 27 | ||ui ||molgenis user interface framework ||all systems || |
| | 28 | ||compute ||molgenis compute framework including 'cluster' and 'script submission' tools ||impute, xqtl, ngs || |
| | 29 | ||[wiki:XgapStart xgap] ||high-throughput low variability data model for markers, snps, probes, qtls etc ||xqtl-workbench, ngs-lims, gwas-workbench || |
| | 30 | ||pheno ||low-throughput data model high variability data model for phenotypes ||col7a1, animaldb, biobank-warehouse || |
| | 31 | ||data ||data model, user interface & back-end to browse and search available data in a matrix form ||col7a1, animaldb, biobank-warehouse || |
| | 32 | ||convertors ||convertors that transform external file formats into org.molgenis data models so they can be imported automatically || |
| | 33 | ||[wiki:AuthModule auth] ||Authentication and authorization plugin ||all systems || |
| | 34 | |
| | 35 | == Application components == |
| | 36 | These are specific applications (or 'end-product') build for a particular project or user group. |
| | 37 | |
| | 38 | ||'''application''' ||'''description''' ||'''projects that participate in this component''' || |
| | 39 | ||data-explorer ||datawarehouse application to explore all available observation data ||lifelines, bbmri, gids, animaldb || |
| | 40 | |
| | 41 | == Dependencies and other keywords == |
| | 42 | Obviously there can be a dependency between components. For example, 'animaldb' depends on 'auth'. To make this dependency visible and queryable we use the keywords field. For example: if 'animaldb' and 'col7a1' both have a dependency on a ticket in the auth component this ticket will have keyewords 'animaldb col7a1'. |
| 89 | | |
| 90 | | == Shared components == |
| 91 | | these are reusable models (or 'semi-finished module) used across multiple molgenis applications. |
| 92 | | |
| 93 | | ||'''component''' ||'''summary''' ||'''used''' || |
| 94 | | ||db ||molgenis database backend including mysql and jpa ||all systems || |
| 95 | | ||ui ||molgenis user interface framework ||all systems || |
| 96 | | ||compute ||molgenis compute framework including 'cluster' and 'script submission' tools ||impute, xqtl, ngs || |
| 97 | | ||[wiki:XgapStart xgap] ||high-throughput low variability data model for markers, snps, probes, qtls etc ||xqtl-workbench, ngs-lims, gwas-workbench || |
| 98 | | ||pheno ||low-throughput data model high variability data model for phenotypes ||col7a1, animaldb, biobank-warehouse || |
| 99 | | ||data ||data model, user interface & back-end to browse and search available data in a matrix form ||col7a1, animaldb, biobank-warehouse || |
| 100 | | ||convertors ||convertors that transform external file formats into org.molgenis data models so they can be imported automatically || |
| 101 | | ||[wiki:AuthModule auth] ||Authentication and authorization plugin ||all systems || |
| 102 | | |
| 103 | | == Application components == |
| 104 | | These are specific applications (or 'end-product') build for a particular project or user group. |
| 105 | | |
| 106 | | ||'''application''' ||'''description''' ||'''projects that participate in this component''' || |
| 107 | | ||data-explorer ||datawarehouse application to explore all available observation data ||lifelines, bbmri, gids, animaldb || |
| 108 | | |
| 109 | | == Dependencies and other keywords == |
| 110 | | Obviously there can be a dependency between components. For example, 'animaldb' depends on 'auth'. To make this dependency visible and queryable we use the keywords field. For example: if 'animaldb' and 'col7a1' both have a dependency on a ticket in the auth component this ticket will have keyewords 'animaldb col7a1'. |
