| 1 | | [[TOC(depth=2,MolgenisIntro,MolgenisOnWindows,MolgenisOnUbuntu,MolgenisOnEclipse,MolgenisWorkspaceBasics,MolgenisGeneratorBasics,MolgenisAddressBookExample,MolgenisFromExisting,MolgenisLanguageReference,MolgenisDtd,MolgenisPlugin,MolgenisDatabase,MolgenisEmail,MolgenisBatchLoading,MolgenisRinterface,MolgenisSoapInterface)]] |
| 2 | | = MOLGENIS manual = |
| 3 | | For MOLGENIS 3.3.2 |
| 4 | | == Table of Contents == |
| 5 | | 1. '''[MolgenisIntro Introduction into MOLGENIS]''' |
| 6 | | 1. '''User guide''' |
| 7 | | * [MolgenisUserInterface User interface] -- How to browse and edit data |
| 8 | | * [MolgenisBatchLoading Batch loading] -- How to import datasets from CSV files |
| 9 | | * [MolgenisRinterface R interface] -- H to connect to your MOLGENIS via R |
| 10 | | * [MolgenisSoapInterface SOAP interface] -- How connect to your MOLGENIS via web services (in Taverna)' |
| 11 | | 1. '''Installing MOLGENIS development kit''' |
| 12 | | * [MolgenisOnWindows Windows] -- How to setup the generator on Microsoft Windows |
| 13 | | * [MolgenisOnUbuntu Ubuntu] -- How to setup the generator on Ubuntu Linux |
| 14 | | * [MolgenisOnEclipse Eclipse] -- How to get a useful Eclipse installed |
| | 1 | = MOLGENIS development kit 3.3.2 manual = |
| | 2 | |
| | 3 | 1. '''Introduction''' |
| | 4 | * [MolgenisIntro Introduction] |
| | 5 | * [MolgenisToc Detailed table of contents] |
| | 6 | 1. '''Application overview''' |
| | 7 | * [MolgenisUserInterface Browsing and editing data]a |
| | 8 | * [MolgenisBatchLoading CSV file loading] |
| | 9 | * [MolgenisRinterface Connecting to R] |
| | 10 | * [MolgenisSoapInterface Connecting to SOAP web services] |
| | 11 | 1. '''MDK Installation''' |
| | 12 | * [MolgenisOnWindows Installation on Windows] |
| | 13 | * [MolgenisOnUbuntu Installation on Ubuntu] |
| | 14 | * [MolgenisOnEclipse Configuration of Eclipse] |
| 16 | | * [MolgenisWorkspaceBasics MOLGENIS workspace basics] |
| 17 | | * [MolgenisGeneratorBasics Run the generator] |
| 18 | | * [MolgenisAddressBookExample Generate a new MOLGENIS from scratch] |
| 19 | | * [MolgenisFromExisting Generate a MOLGENIS from an existing database] |
| | 16 | * [MolgenisWorkspaceBasics MOLGENIS workspace basics] |
| | 17 | * [MolgenisGeneratorBasics Run the generator] |
| | 18 | * [MolgenisAddressBookExample Generate a new MOLGENIS from scratch] |
| | 19 | * [MolgenisFromExisting Generate a MOLGENIS from an existing database] |
| 21 | | * [MolgenisLanguageReference MOLGENIS language reference] |
| 22 | | * [MolgenisDtd XML DTD] |
| 23 | | 1. '''Creating hand-written plug-ins''' |
| 24 | | * [MolgenisPlugin Adding a user interface plugin] |
| 25 | | * [MolgenisDatabase Using MOLGENIS database backend] |
| 26 | | * [MolgenisEmail Sending emails] |
| 27 | | * [http://gbic.target.rug.nl:8080/hudson/job/molgenis/ws/3.3/build/javadoc/index.html JavaDoc] |
| 28 | | * [MolgenisCustomCommand Adding custom buttons to generated forms] |
| | 21 | * [MolgenisLanguageReference MOLGENIS language reference] |
| | 22 | * [MolgenisDtd XML DTD] |
| | 23 | 1. '''Using the plug-in system''' |
| | 24 | * [MolgenisPlugin Adding a user interface plugin] |
| | 25 | * [MolgenisDatabase Using MOLGENIS database backend] |
| | 26 | * [MolgenisEmail Sending emails] |
| | 27 | * [http://gbic.target.rug.nl:8080/hudson/job/molgenis/ws/3.3/build/javadoc/index.html JavaDoc] |
| | 28 | * [MolgenisCustomCommand Adding custom buttons to generated forms] |
