The MOLGENIS user guide

This MolgenisGuide is meant to serve as a starting point for all documentation regarding MOLGENIS usage for application development. The guide is a free document, a collaborative effort, and a part of the MOLGENIS Project itself.

Table of Contents

Currently available documentation:

• MolgenisIntro? -- Introduction into MOLGENIS

• User guide
  • MolgenisUserInterface? -- How to browse and edit data
  • MolgenisBatchLoading? -- How to import datasets from CSV files
  • MolgenisRinterface? -- How to connect to your MOLGENIS via R
  • MolgenisSoapInterface? -- How connect to your MOLGENIS via web services (in Taverna)
  • Generate a RDF/Sparql interface

• Developer Guide
  • Installing MOLGENIS development kit
    • MolgenisOnWindows -- How to setup the generator on Microsoft Windows
    • MolgenisOnUbuntu? -- How to setup the generator on Ubuntu Linux
    • MolgenisOnEclipse -- How to get a useful Eclipse installed
  • Using the generator
    • MolgenisWorkspaceBasics -- How to open a MOLGENIS workspace
    • MolgenisGeneratorBasics -- How to use the generator
    • MolgenisAddressBookExample -- How to generate a new MOLGENIS from scratch
    • MolgenisFromExisting -- How to generate a MOLGENIS from an existing database
  • Using the XML modelling language
    • MolgenisLanguageReference -- How to use the language elements
    • MolgenisDtd -- Language definition
  • Using the plugin framework
    • MolgenisPlugin? -- How to add a plugin to your MOLGENIS
    • MolgenisDatabase? -- How to use the MOLGENIS database backend from your plugin
    • MolgenisEmail -- How to send emails from your MOLGENIS
    • ​MolgenisJavaDoc -- Overview of the MOLGENIS components
    • MolgenisCustomCommand? -- How to add custom buttons/dialogs to the generated forms

• Generate a RDF/Sparql interface