MOLGENIS development manual

• Table of Contents
  • Introduction
    • Introduction?
    • Detailed table of contents?
  • MOLGENIS application overview
    • Browsing and editing?
    • CSV file loading?
    • Connecting to R?
    • Connecting to SOAP web services?
    • Connecting to REST web services using CURL?
    • Molgenis as a datasource for Galaxy
  • Toolkit Installation
    • Preperation on Windows
    • Preperation on Ubuntu/Linux?
    • Installation of Eclipse/Galileo
    • Installation of Eclipse/Helios
    • Installation of Eclipse/Indigo
    • Download MOLGENIS
  • Generating your own applications
    • MOLGENIS workspace basics
    • Running the generator
    • Modeling a new MOLGENIS
    • Modeling an existing database
    • molgenis.properties file?
  • Adding plug-ins
    • Screen plugin?
    • Database plugin?
    • Email plugin
    • Command plugin?
    • ​JavaDoc
  • Building on the MOLGENIS framework
    • Database API?
    • Customize database mapping with MappingDecorator
    • Using Java Persistency API (JPA)?
  • MOLGENIS Data Modeling Language Reference
    • <molgenis> element?
    • <module> element?
    • <entity> element?
    • <field> element?
    • <unique> element?
  • MOLGENIS User Interface Modeling Language Reference
    • <form> element?
    • <menu> element?
    • <plugin> element?
    • <include> element?
  • MOLGENIS framework API
    • Javadoc library reference?
  • Frequently asked questions
    • How to change molgenis url from /molgenis_distro to xyz?
    • How to change the MolgenisServlet, e.g. to add more services?
    • How to extend an existing database model?
    • Case sensitivity and issues between windows, linux and mac
    • How to create a hyperlink from plugin to another form?
    • How to create a hyperlink from plugin to another form?
    • How to create a hyperlink from plugin to another form?