Changes between Version 3 and Version 4 of MsStart


Ignore:
Timestamp:
2011-03-18T16:43:56+01:00 (14 years ago)
Author:
Peter Horvatovich
Comment:

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Legend:

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  • MsStart

    v3 v4  
    1616==== Commercial ====
    1717'''Software''': Phenyx 2.6.2 peptide and protein identification platform running on dual Xeon server (8 cores) with 16 GB RAM[[BR]]
    18 '''Availability''': online[[BR]]
     18'''Availability''': [http://129.125.137.24:8080/pwi/login/login_local.jsp online][[BR]]
    1919=== In house developed===
    20 '''Software''': COW-COD, PTW-CODA, DTW-CODA LC-MS time alignment algorithms [[BR]]
    21 '''Availability''': [source code][[BR]]
     20'''Software''': [http://www.ncbi.nlm.nih.gov/pubmed/18715018 COW-CODA], [http://www.ncbi.nlm.nih.gov/pubmed/20070124 PTW-CODA, DTW-CODA] LC-MS time alignment algorithms using raw LC-MS data[[BR]]
     21'''Availability''': [https://trac.nbic.nl/lcms_time_alignment_algorithms source code is available][[BR]]
    2222----
    23 * [[BR]]
     23'''Software''': msComapre is a framework for quantitative processing of label-free LC-MS data including feature extraction/quantification and feature matching modules from popular opensource programs such as [http://www.ncbi.nlm.nih.gov/pubmed/17237091 TOPP OpenMS], [http://www.ncbi.nlm.nih.gov/pubmed/16403790 MZmine] and [http://www.ncbi.nlm.nih.gov/pubmed/17726677 SuperHirn].[[BR]]
     24'''Availability''': [https://trac.nbic.nl/mscompare/ source code with example data, parameters set] and [http://galaxy.nbic.nl/galaxy/ online processing service in NBIC Galaxy] is available[[BR]]
     25----
     26'''Software''': [http://www.ncbi.nlm.nih.gov/pubmed/18396914 Warp2D] tool performing time alignment of LC-MS peak lists[[BR]]
     27'''Availability''': [http://www.nbpp.nl/warp2d.html online processing service is available] [http://www.ncbi.nlm.nih.gov/pubmed/21349866 (ref)][[BR]]
     28----
     29'''Software''': several discriminating compound selection methods such as ''t''-test, Mann-Whitney-Wilcoxon-test, Nearest Shrunken Centroid, linear Support Vector Machine – Recursive Features Elimination, Principal Component Discriminant Analysis and Partial Least Squares Discriminant Analysis[[BR]]
     30'''Availability''': source code available in-house[[BR]]