Deployment SOP for developers

This SOP describes how to deploy MOLGENIS v2.0 on a server with a clean Golden VM deployed

• Login on VM

  ssh lobby+molgenis[0-9]
  

• Execute the following as molgenis user.

  #
  # Edit the existing molgenis-server.properties file
  # 
  echo '
  db_user=molgenis  
  db_password=molgenis  
  db_driver=org.postgresql.Driver
  db_uri=jdbc\:postgresql\://localhost/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE
  admin.password=admin  
  user.password=admin  
  mail.username=<Username>
  mail.password=<Password>
  ' > ~/.molgenis/molgenis-server.properties 
  
  #
  # Install tomcat users
  #
  nano -w ~/apache-tomcat/conf/tomcat-users.xml
  
  #
  # Paste just before the closing tag from tomcat-users (</tomcat-users>):
  # Update the password to the true passwords.
  #
  <role rolename="manager-gui"/>
  <user username="molgenis" password="password" roles="manager-gui,manager-script"/>
  <role rolename="login"/>
  <user username="molgenis_user" password="password" roles="login"/>
  
  #
  # Start Tomcat server
  #
  sudo service tomcat7 start
  
  #
  # Start Apache HTTPD server
  #
  sudo service httpd start
  

• ​Deploying a server in Jenkins
• Make sure that relevant daemons startup on reboot.

  sudo chkconfig
  

  If httpd, tomcat7 or mysqld are off, turn them on:

  sudo chkconfig httpd on
  sudo chkconfig tomcat7 on
  sudo chkconfig mysqld on
  

• Starting and stopping daemons

  sudo service [daemon] [start|stop|status|reload|restart]
  

  For example to restart Tomcat:

  sudo service tomcat7 restart