Changes between Version 29 and Version 30 of SopConvertLifeLinesGenoData


Ignore:
Timestamp:
2012-04-21T11:20:15+02:00 (13 years ago)
Author:
Morris Swertz
Comment:

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  • SopConvertLifeLinesGenoData

    v29 v30  
    1717
    1818User expects files in PLINK format:
    19 * PED/MAP/FAM genotype files (split per chromosome, with missing value phenotype, monomorphic filtered)
    20 * BIM/BED/FAM genotype files (split per chromosome, with missing value phenotype, monomorphic filtered)
    21 * MAP/PED dosage files (split per chromosome, with missing value phenotype, monomorphic filtered)
     19* PED/MAP/FAM imputed genotype files (split per chromosome, with missing value phenotype, monomorphic filtered)
     20* BIM/BED/FAM imputed genotype files (split per chromosome, with missing value phenotype, monomorphic filtered)
     21* MAP/PED imputed dosage files (split per chromosome, with missing value phenotype, monomorphic filtered)
     22* batch.txt listing imputation batches
     23* impution_quality.txt listing imputation quality per SNP x batch
    2224
     25> TODO monomorphic filtering
    2326== Required inputs ==
    2427